FC931670

Overview
NameFC931670
Unique NameFC931670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931670_ssr9 microsatellite FC931670_ssr9:9..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 79/216 (36.57%), Postives = 117/216 (54.17%), Query Frame = 1
Query:   64 MGGKSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPE--WERLLPH-------VRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDE 684
            M   S  K  Y E+    L +Y  +    +DNV SQQ+H++R  LRG   ++MGK T+ ++ ++    +     +++LL +       + GN   IFT  ++      +                 DV VPAGNTGMEP  T+FFQAL + TKIA+GT+EIVSD K++  G++V  S ATLL  L+ISPF Y + +  V++ G  F  + L ITD+
Sbjct:    1 MPSVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSITDD 216          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.192e-30
Identity = 79/218 (36.24%), Postives = 118/218 (54.13%), Query Frame = 1
Query:   76 SATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRAL-------------KGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQL 690
            +  K  Y E+L   L +YS +  VG+DNV SQQ+H++  ALR +A  +MGK T+  + +             K F  +  E+  L     GN G IFT   ++     +                 DV V AG+TGMEP +T+FFQAL + TKIA+G +EIV++ K++  G+KV  S ATLL  LNISPF Y + +  V++ G  F+ + L +T++ +
Sbjct:    5 TTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLL----SGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMV 218          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: YL339_YEAST (Putative uncharacterized protein YLR339C OS=Saccharomyces cerevisiae GN=YLR339C PE=5 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.032e-29
Identity = 76/152 (50.00%), Postives = 89/152 (58.55%), Query Frame = -3
Query:   57 MVPRAILVGTPRAWKKAVLPGSIPVLPAGTQXXXXXXXXXXXXXXXXXXRIFSLVALRSPLVKMKPTLPRTWGRRRSHSGFSVTKPLRARRTMVFLPIRTTASPRRAIRISCIC*ELTLSTPTMKMVLYSLRRVRSFSK*AVLVADLPPISS 512
            MVP AILVGTP+AWKK VLPGSIPVL A TQ                   I  L+++   LVK KPTLP T G   S SG S  KPL A  TMVFLPI+TTA P  +   SCIC E TLSTPT    LYS +   + +K +   + +PPIS+
Sbjct:    1 MVPLAILVGTPKAWKKEVLPGSIPVLTALTQMSSGATAPALAGAATLLETITFLISVNGSLVKTKPTLPLTKGNNFSKSGKSDKKPLMALLTMVFLPIKTTALPLNSFLTSCICWEETLSTPTTNKDLYSSKYSLNLAKYSAFFSRMPPISN 152          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 59/201 (29.35%), Postives = 104/201 (51.74%), Query Frame = 1
Query:  100 EKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTE--NPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGK-TAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLL 693
            E+L  ++  Y  I +V V NV +  + ++R  LRG+A++ + +NT++  A+K    E   PE E+L+ H++G  G + T+ +     + +                 DV +PAG T + PG      QALG+P +I +G + I  D  +++AG  +    A +LN L I P   G+ +   YE+G  ++ +VL I +E+ +
Sbjct:   13 EELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYI 213          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 61/199 (30.65%), Postives = 106/199 (53.27%), Query Frame = 1
Query:  103 KLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGK-TAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLA 696
            +L++L+++Y  I IV + N+ ++Q+ E+R +L  +AV+ M K  ++  AL+           L  H+ G V  I T+ +     + +                DD+ +P G+TG EPG      Q +G+P KI +G I +  +  LVEAG +V A+ A+ L+ ++I+P   G+ +  VYE    ++++VL I +EQ LA
Sbjct:   14 ELKSLIDKYDVIGIVDLLNIPAKQLQEMRKSLHNKAVIRMSKKNLIDLALEDCNASKNNIVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLA 212          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 62/202 (30.69%), Postives = 105/202 (51.98%), Query Frame = 1
Query:  100 EKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTE--NPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGK-TAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLA 696
            E+L  LL +Y  I +V V +V +  + ++R +LR +AV+ + +NT++  ALK    E  +   E+L+ H++G  G + TK +     + +                 DV VPAG T + PG      QALG+P +I +G + I  D  +++AG  +    A +LN L I P   G+ +   YE+G  ++ +VL I +EQ ++
Sbjct:   13 EELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVYTPEVLAIDEEQYIS 214          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 57/201 (28.36%), Postives = 101/201 (50.25%), Query Frame = 1
Query:  100 EKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTE--NPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGK-TAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLL 693
            E+L  ++  Y  I +V V  V +  + ++R  LRG+A++ + +NT++  A+K    E   PE E+L+ H++G    + T+ +     + +                 DV +PAG T + PG      QALG+P +I +G + I  D  +++AG  +    A +LN L I P   G+ +   YE+G  ++ DVL I + + +
Sbjct:   13 EELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELGQPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYI 213          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 60/194 (30.93%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  100 EKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRG-EAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGK-TAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDI 675
            ++L+ L++EY  + +V ++ + + Q+ EIR  LR  + ++ M +NT++R AL+  + E PE E LL ++ G V FIFT  D     + +                +D+ VP G T  EPG   +  Q  G+P +I  G + I  D  LV+ G ++    A +L  L I P   G+ I  +   G  F  D L I
Sbjct:   26 KELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALEEKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPMEVGVDIVAIVAEGTLFERDDLAI 219          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 59/200 (29.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:  103 KLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTE--NPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGK-TAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLL 693
            KL+ LL     + +V +  V ++Q+ EIR  +RG   + M +NT++ RA+K    E  NPE+ +L  ++      I T  +     + +                 D+ V AG+TGM PG      +++G+P  I +G I I  D  + +AG  V    A +L+ L I P T G+ +   YE+G  ++ DVL I +E+ +
Sbjct:   20 KLKELLKNGQIVALVDMMEVPARQLQEIRDKIRGTMTLKMSRNTLIERAIKEVAEETGNPEFAKLADYIDKGAAIITTDMNPFKLYKTLEESKSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDGVIYTPDVLKIDEEEFV 219          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 56/200 (28.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:  100 EKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKT-AFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLA 696
            ++L  L+  Y  + I  + ++ ++Q+ ++R  LR  A++ M K T++  AL+    E    + L  ++ G    IFT  +     + +                DD+ VP G+TG  PG      Q +G+P KI +G I + +D  +V+AG ++    A +L  L+I P   G+ +   YEN   ++ADVL I +E+ L+
Sbjct:   13 QELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDSALIRMSKKTLISLALEKAGRELENVDSLSDYMEGQPALIFTDMNPFKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLS 212          
The following BLAST results are available for this feature:
BLAST of FC931670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLA0_TRYCR1.651e-3036.5760S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEIIN8.192e-3036.2460S acidic ribosomal protein P0 OS=Leishmania infa... [more]
YL339_YEAST4.032e-2950.00Putative uncharacterized protein YLR339C OS=Saccha... [more]
RLA0_THEON1.072e-2129.35Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METS33.120e-2130.65Acidic ribosomal protein P0 homolog OS=Methanobrev... [more]
RLA0_THESM9.078e-2130.69Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_PYRKO3.450e-2028.36Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METKA1.004e-1930.93Acidic ribosomal protein P0 homolog OS=Methanopyru... [more]
RLA0_METTL1.893e-1829.50Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METTH1.893e-1828.00Acidic ribosomal protein P0 homolog OS=Methanobact... [more]

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Properties
Property NameValue
Genbank descriptionC34107G01EF PostHarvP1 Citrus clementina cDNA clone C34107G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931670 ID=FC931670; Name=FC931670; organism=Citrus clementina; type=EST; length=703bp
GATTCACCACAACAACAACAGACTTTCCCTTAAACAACCTATCTTCACCG
AAATCAAGAAGAAATGGGGGGTAAGTCCGCAACCAAGACCGCTTACTTTG
AGAAGCTGCGTACTCTTCTCAATGAGTACAGCACCATCTTCATCGTTGGA
GTTGACAATGTCAGCTCTCAGCAGATGCACGAGATCCGTATGGCTCTCCG
TGGTGAGGCCGTCGTTCTGATGGGTAAGAACACCATGGTTCGCCGTGCCC
TCAAGGGTTTCGTCACCGAGAACCCCGAGTGGGAGCGCCTCCTTCCCCAC
GTCCGTGGCAACGTTGGTTTCATTTTCACCAAGGGTGACCTTAAGGCCAC
CAAGGAGAAGATCCTTGCCAACCGTGTCGCTGCTCCCGCTCGTGCCGGTG
CCGTCGCCCCCGACGATGTCTGGGTTCCCGCTGGTAACACTGGTATGGAG
CCCGGTAAGACCGCCTTCTTCCAGGCTCTCGGTGTCCCCACCAAGATCGC
TCGTGGTACCATTGAGATTGTTTCCGACCTCAAGCTCGTTGAGGCTGGCA
ACAAGGTCGGTGCCTCCGAGGCTACCCTTCTTAACCTGTTGAACATCTCT
CCGTTCACCTACGGTATGACCATCACCCAGGTCTACGAGAACGGTCAGTG
CTTCAGTGCCGATGTTCTTGACATCACCGATGAGCAGCTCTTGGCCGCCT
TCT
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