FC931673

Overview
NameFC931673
Unique NameFC931673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 70/177 (39.55%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE-----KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F+L WI+ Q  +W   +   + DRLS+R E      KL  VD+FV T DP+ EPP +  +T+LS+++ +YP  K+S Y+SDD  S   F  L E S F++ W+PFCKK++VEPR+PE +F++K+   KDK  TT+ +    +K++Y++ K RI   +AK     E G
Sbjct:  244 WLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEKNKLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYFSEKIDYLKDKVQTTFVKDRRAMKREYEEFKVRINALVAKAQKKPEEG 420          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.889e-33
Identity = 73/201 (36.32%), Postives = 119/201 (59.20%), Query Frame = 2
Query:  110 ICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            +CL L YR+ N             W+   + + +F+L WI+ Q  +W   +   + DRL+LR++ +     L  VDIFV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  +F +L E S F++ W+PFCKK+ +EPR+PE +FA K+   KDK  T++ +    +K++Y++ K RI   ++K     E G
Sbjct:  269 LCLFLHYRITNPVPNAFA-----LWLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEG 464          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.385e-33
Identity = 67/177 (37.85%), Postives = 112/177 (63.28%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE-----KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F+  W++ Q  +W   +   F DRL+LR++      +L  VD+FV T DP+ EPP +  +TVLS+++ +YP +K++ Y+SDD  +  TF AL E + FSK W+PFCKKF++EPR+PE +F++K+   KDK   ++ +    +K++Y++ K RI + +AK     E G
Sbjct:  291 WLTSVICEIWFAFSWLLDQFPKWYPINRETFLDRLALRYDRDGEPSQLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINILVAKAQKIPEDG 467          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.089e-32
Identity = 74/193 (38.34%), Postives = 116/193 (60.10%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAK-------GSISKE----TGNHTGD 706
            W+   + + +F++ WI+ Q  +W       + DRLSLR+E +     L  VD+FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  S  TF +L E + F++ W+PFCKKF +EPR+PE +F++K+   KDK    + Q    +K++Y++ K RI   +AK       G I K+     GN+T D
Sbjct:  296 WLTSIICEIWFAVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINALVAKAQKVPAEGWIMKDGTPWPGNNTRD 488          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.089e-32
Identity = 74/193 (38.34%), Postives = 116/193 (60.10%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAK-------GSISKE----TGNHTGD 706
            W+   + + +F++ WI+ Q  +W       + DRLSLR+E +     L  VD+FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  S  TF +L E + F++ W+PFCKKF +EPR+PE +F++K+   KDK    + Q    +K++Y++ K RI   +AK       G I K+     GN+T D
Sbjct:  296 WLTSIICEIWFAVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRINALVAKAQKVPAEGWIMKDGTPWPGNNTRD 488          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.422e-32
Identity = 67/177 (37.85%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE-----KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F+L WI+ Q  +WS      + DRL+LR+E      +L  +D FV T DP+ EPP +  +TVLS+++ +YP +++S Y+SDD  S   F  L E + F++ W+PFCKKF +EPR+PE +F++K+   KDK   T+ +    +K++Y++ K RI   +AK     E G
Sbjct:  242 WLASVICELWFALSWILDQLPKWSPVTRETYLDRLALRYERDGEPCRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVDRVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKFTIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEG 418          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.169e-32
Identity = 70/201 (34.83%), Postives = 118/201 (58.71%), Query Frame = 2
Query:  110 ICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE-----KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            +C  L YR  +  K          W+   + + +F+  W++ Q  +W   +   + DRL++R++      +L  VD+FV T DP+ EPP +  +TVLS++S +YP +K++ Y+SDD  +  TF +L E + F+K W+PFCKKF++EPR+PE +FA+K+   KDK   ++ +    +K++Y++ K RI   +AK     E G
Sbjct:  285 LCFFLQYRTTHPVKNAYP-----LWLTSVICEIWFAFSWLLDQFPKWYPINRETYLDRLAIRYDRDGEPSQLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEG 480          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.139e-32
Identity = 71/177 (40.11%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ WI+ Q  +W       + DRLSLR +++     L  VD FV T DP  EPP +  +TVLS++S +YP EK+S Y+SDD  +  TF AL E S F+K W+PFCKKF++EPR+PE +F +K+   KDK   ++ +    +K+ Y++ K RI   +AK     E G
Sbjct:  308 WLISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLRFDKEGQPSQLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYFQQKIDYLKDKVAASFVRERRAMKRDYEEFKVRINALVAKAQKVPEEG 484          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32
Identity = 65/177 (36.72%), Postives = 111/177 (62.71%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F+L W++ Q  +W   +   + DRL+LR++ +     L  +D+FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E + F++ W+PFCKK ++EPR+PE +FA+K+   KDK   ++ +    +K++Y++ K RI   +AK     E G
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEG 477          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.059e-32
Identity = 65/177 (36.72%), Postives = 111/177 (62.71%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F+L W++ Q  +W   +   + DRL+LR++ +     L  +D+FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E + F++ W+PFCKK ++EPR+PE +FA+K+   KDK   ++ +    +K++Y++ K RI   +AK     E G
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEG 477          
The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CESA4_ARATH2.866e-3339.55Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA3_ARATH4.889e-3336.32Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESAA_ARATH6.385e-3337.85Probable cellulose synthase A catalytic subunit 10... [more]
CESA9_ORYSJ1.089e-3238.34Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI1.089e-3238.34Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA7_ORYSJ1.422e-3237.85Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA1_ARATH3.169e-3234.83Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA6_ORYSJ4.139e-3240.11Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA1_ORYSJ7.059e-3236.72Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI7.059e-3236.72Probable cellulose synthase A catalytic subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34107G04EF PostHarvP1 Citrus clementina cDNA clone C34107G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bp
GAAAACTGGAATTTGTGCTATAGAAGAAGCTATGGTACCACTTTTCGAGA
CTAAGGAGGCGAAGGCTAGGGTTTCTCACAAGGTGTTCGCAGCAACATGT
TTTGTGGGAATTTGTTTGATATTGATTTACAGATTGGTTAACTTTCCAAA
AGAAGAACAAGGAGGAAGAAGGAGATGGGCTTGGATTGGCATTTTCATGG
CTGATTTTTTTTTCAGTTTGTTCTGGATCATCACCCAGTCTGTTCGTTGG
AGTGTAAGACACCATTTGCCTTTCAAAGACAGACTCTCCCTAAGACATGA
GGAGAAGTTACCGGGAGTTGACATTTTCGTGTGCACGGCGGACCCAATCT
CAGAGCCACCAACGTTGGTGATTAGTACTGTCTTATCCGTCATGTCATAT
AACTATCCACCGGAAAAATTGAGTGTTTATTTGTCTGATGATGCTGGTTC
AGAATTCACATTTTATGCTCTGTTAGAGGCCTCTCATTTCTCAAAGTATT
GGATACCGTTCTGCAAAAAATTCGATGTTGAACCAAGGTCACCAGAAGCC
TGGTTTGCTAAAAAACTTGGTGAGAAAGATAAAGATACCACTTATACTCA
AGCGTGTCTAACTATCAAGAAACAATACCAAGACATGAAAACCCGTATTG
AATTGGCCATTGCAAAGGGCAGCATTTCGAAAGAAACAGGAAATCACACA
GGGGATCTCTGAATGGAATGTAAAGTA
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