FC931673

Overview
NameFC931673
Unique NameFC931673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 69/200 (34.50%), Postives = 123/200 (61.50%), Query Frame = 2
Query:   68 RVSHKVFAATC----FVGICL-ILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            R+SHK +         +G+ L +L+YR+++  +++        WI  F+ +  F+  W++  +++WS   +  + +RL  R  E LP VD+FV TADP+ EPP +V++TVLS+++ NYP  KL+ Y+SDD  S  T+++L EAS F+K W+PFCKK++V  R+P  +F +   E  + + +++     K++Y+ +  ++E
Sbjct:   14 RISHKSYFLRAVDLTILGLLLSLLLYRILHVNQKDT------VWIVAFLCETCFTFVWLLITNIKWSPADYKTYPERLDERVHE-LPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF-RNSPEAAEGSEFSKDWEMTKREYEKLSQKVE 205          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 75/213 (35.21%), Postives = 122/213 (57.28%), Query Frame = 2
Query:   29 AMVPLFETKEAKARVSHKVFAA-----TCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            +++PL E      R+SHK +       T  V +  +L YR+++  +          W+  F+ +  FS  W+I   ++WS     P+ +RL  R  + LP VD+FV TADP+ EPP +V++TVLS+++ NYP  KL+ Y+SDD  S  T+++L EAS F K W PFCKK++V  R+P  +F   L   D D+ +++    +K++Y  +  ++E
Sbjct:    7 SLLPLCE------RISHKSYILRIVDLTILVLLFSLLWYRILHMCENNT------IWLVAFLCESCFSFMWLIITCIKWSPAEDKPYPNRLDERVHD-LPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATD-DSVFSKDWKMMKREYVKLCRKVE 205          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 68/183 (37.16%), Postives = 110/183 (60.11%), Query Frame = 2
Query:  119 ILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF-----AKKLGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            +L+YR++   +          W+  F+ + FFS  W++  S++WS   +  + +RL  R  + LP VD+FV TADP+ EPP LV +T+LS+++ NYP  KL+ Y+SDD  S  T+++L EAS F+K W+PFCKK++++ R+P  +F     A +  E  KD   T      K++Y+ +  R+E
Sbjct:   36 LLLYRILLMNQNNS------VWVVAFLCESFFSFIWLLITSIKWSPASYKSYPERLDERVHD-LPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYFLNPPAATESSEFSKDWEIT------KREYEKLSRRVE 205          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 72/237 (30.38%), Postives = 133/237 (56.12%), Query Frame = 2
Query:    2 KTGICAIEEAMVPLFETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            ++G   +   ++P+  TK      S+++      + + L   YR+ + P +   G     W+   + + +F++ W++ Q  +WS  +   + DRLS R E +     L  VD FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  +F +L+E + F++ W+PFCKK+ +EPR+PE +F+ K+   +DK   ++ +    +K+ Y++ K R+   +AK   + E G
Sbjct:  162 ESGATDVLSVVIPIPRTKIT----SYRIVIIMRLIILALFFNYRITH-PVDSAYG----LWLTSVICEIWFAVSWVLDQFPKWSPINRETYIDRLSARFEREGEQSQLAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKYSIEPRAPEFYFSLKIDYLRDKVQPSFVKERRAMKRDYEEFKIRMNALVAKAQKTPEEG 389          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 67/177 (37.85%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDKDTTY-TQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ WI+ Q  +W       + DRL+LR +++     L  +D FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E S F+K W+PFCKK+ +EPR+PE +F +K+   KDK   Y  +    +K++Y++ K RI   +AK     E G
Sbjct:  308 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQTSQLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYFQQKIDYLKDKVAPYFVRERRAMKREYEEFKVRINALVAKAQKVPEEG 484          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 67/177 (37.85%), Postives = 111/177 (62.71%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F+L WI+ Q  +W   +   + DRL+LR++ +     L  VDIFV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E S F++ W+PF KK+++EPR+PE +F++K+   KDK   ++ +    +K++Y++ K RI   +AK     E G
Sbjct:  305 WLLSVICEIWFALSWILDQFPKWFPINRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFVKKYNIEPRAPEWYFSQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEG 481          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 61/157 (38.85%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            W+  F  +  F L  ++   ++WS     PF DRL  R  + LP VD+FV TADP+ EPP +V+ TVLS+++ NYP  KL+ Y+SDD  S  T+++L EAS F+K W+PFCKK++   R+P  +F K +    +D  + +     K++Y+ ++ ++E
Sbjct:   51 WLVAFFCESCFFLVCLLITCLKWSPADTKPFPDRLDERVHD-LPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTKREYEKLRRKVE 206          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 66/177 (37.29%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ WI+ Q  +W       + DRL+LR +++     L  VD FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E S F+K W+PFCK++ +EPR+PE +F +K+   KDK    + +    +K++Y++ K RI   +AK     E G
Sbjct:  307 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYFQQKIDYLKDKVAPNFVRERRAMKREYEEFKVRINALVAKAQKVPEEG 483          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 66/177 (37.29%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ WI+ Q  +W       + DRL+LR +++     L  VD FV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E S F+K W+PFCK++ +EPR+PE +F +K+   KDK    + +    +K++Y++ K RI   +AK     E G
Sbjct:  307 WLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYFQQKIDYLKDKVAPNFVRERRAMKREYEEFKVRINALVAKAQKVPEEG 483          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 64/176 (36.36%), Postives = 105/176 (59.66%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRH----EEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F   WI+ Q  +W   +   + DRL  R+    +  L  VD FV T DP+ EPP +  +TVLS+++ +YP EK+S Y+SDD  +  TF +L E + F++ W+PFCKK+ +EPR+PE +F++K+   KDK   ++ +    +K+ Y++ K RI   +AK   + E G
Sbjct:  218 WMTSVICEIWFGFSWILDQFPKWCPINRETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEG 393          
The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLB4_ARATH1.573e-3134.50Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB6_ARATH2.683e-3135.21Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB3_ARATH2.683e-3137.16Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CESA8_ARATH2.683e-3130.38Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA3_ORYSJ2.683e-3137.85Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA8_ORYSJ7.805e-3137.85Probable cellulose synthase A catalytic subunit 8 ... [more]
CSLB1_ARATH2.271e-3038.85Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CESA5_ORYSJ2.271e-3037.29Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI2.271e-3037.29Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA4_ORYSJ2.271e-3036.36Cellulose synthase A catalytic subunit 4 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC34107G04EF PostHarvP1 Citrus clementina cDNA clone C34107G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bp
GAAAACTGGAATTTGTGCTATAGAAGAAGCTATGGTACCACTTTTCGAGA
CTAAGGAGGCGAAGGCTAGGGTTTCTCACAAGGTGTTCGCAGCAACATGT
TTTGTGGGAATTTGTTTGATATTGATTTACAGATTGGTTAACTTTCCAAA
AGAAGAACAAGGAGGAAGAAGGAGATGGGCTTGGATTGGCATTTTCATGG
CTGATTTTTTTTTCAGTTTGTTCTGGATCATCACCCAGTCTGTTCGTTGG
AGTGTAAGACACCATTTGCCTTTCAAAGACAGACTCTCCCTAAGACATGA
GGAGAAGTTACCGGGAGTTGACATTTTCGTGTGCACGGCGGACCCAATCT
CAGAGCCACCAACGTTGGTGATTAGTACTGTCTTATCCGTCATGTCATAT
AACTATCCACCGGAAAAATTGAGTGTTTATTTGTCTGATGATGCTGGTTC
AGAATTCACATTTTATGCTCTGTTAGAGGCCTCTCATTTCTCAAAGTATT
GGATACCGTTCTGCAAAAAATTCGATGTTGAACCAAGGTCACCAGAAGCC
TGGTTTGCTAAAAAACTTGGTGAGAAAGATAAAGATACCACTTATACTCA
AGCGTGTCTAACTATCAAGAAACAATACCAAGACATGAAAACCCGTATTG
AATTGGCCATTGCAAAGGGCAGCATTTCGAAAGAAACAGGAAATCACACA
GGGGATCTCTGAATGGAATGTAAAGTA
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