FC931673

Overview
NameFC931673
Unique NameFC931673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 64/176 (36.36%), Postives = 105/176 (59.66%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRH----EEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F   WI+ Q  +W   +   + DRL  R+    +  L  VD FV T DP+ EPP +  +TVLS+++ +YP EK+S Y+SDD  +  TF +L E + F++ W+PFCKK+ +EPR+PE +F++K+   KDK   ++ +    +K+ Y++ K RI   +AK   + E G
Sbjct:  218 WMTSVICEIWFGFSWILDQFPKWCPINRETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEG 393          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 61/177 (34.46%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLG--EKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ WI+ Q  +W       + DRLSLR+E++     L  VD+FV T DP+ EPP +  +TVLS+++ +YP +K++ Y+SDD  +  TF AL + + F++ W+PFCKKF++EPR+PE +F++K+   +      + +    +K+ Y++ K +I   +A      E G
Sbjct:  306 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSGLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSDTAEFARKWVPFCKKFNIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINALVATAQKVPEEG 482          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 62/177 (35.03%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLG--EKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ WI+ Q  +W       + DRLSLR+E++     L  VD+FV T DP+ EPP +  +TVLS+++ +YP EK++ Y+SDD  +  TF AL   + F++ W+PFCKKF +EPR+PE +F++K+   +   D  +      +K+ Y++ K +I   ++      E G
Sbjct:  311 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKHKVDPAFVMERRAMKRDYEEFKVKINALVSVSQKVPEDG 487          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.630e-30
Identity = 60/177 (33.90%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLG--EKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ W++ Q  +W       + DRLSLR+E++     L GVD+FV T DP+ EPP +  +TVLS+++ +YP ++++ Y+SDD  +  TF AL E + F++ W+PFCKK+ +EPR+PE +F  K+   +      + +    +K+ Y++ K +I   +A      E G
Sbjct:  293 WLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYFCHKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINALVATAQKVPEEG 469          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 59/157 (37.58%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            W+  F+ +  FS  W+++   +WS     P+ DRL  R  + LP VD+FV TADP+ EPP +V++TVLS+++ NYP  KL+ Y+SDD  S  T+++L EAS F+K W+PFCKK++++ R+P  +F       +  + +++     K++Y+ +  ++E
Sbjct:   51 WLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDERVYD-LPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYFLNPFAATE-GSEFSRDWEMTKREYEKLCRKVE 205          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 60/177 (33.90%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLG--EKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+   + + +F++ W++ Q  +W       + DRLSLR+E++     L  VD+FV T DP+ EPP +  +TVLS+++ +YP +K++ Y+SDD  +  TF AL E + F++ W+PFCKK+ +EPR+PE +F  K+   +      + +    +K+ Y++ K +I   +A      E G
Sbjct:  305 WLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYFCHKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINALVATAQKVPEDG 481          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 69/215 (32.09%), Postives = 113/215 (52.56%), Query Frame = 2
Query:   38 PLFETKEAKARVSH--KVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKL--------GEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            PLF+T + K  + H  +       + I     +R+ +  K   G    W W    + D +F   W++ Q  + S    +P    L+ RH   LPGVD+FV T DP+ EP    ++T+LS+++ +YP ++ + YLSDD G+   + A++E + F++ W+PFC+K  VEPRSPE +FA K         GE   D         ++++Y++ K RI+
Sbjct:   52 PLFQTYKVKGSILHPYRFLILARLIAIVAFFAWRIRH--KNRDGA---WLWTMSMVGDVWFGFSWVLNQLPKQSPIKRVPDIAALADRHSGDLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYFAMKTQAYKGGVPGELMSDHR------RVRREYEEFKVRID 255          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 68/203 (33.50%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   77 HKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHE----------EKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFA-KKLGEKDK-DTTYTQACLTIKKQYQDMKTRI 649
            +++      V + L L +R+ N        +  W W+   + + +F+  W++ Q  +    +H    + L    E            LPG+D+FV TAD   EPP +  +T+LS++S +YP EKLSVY+SDD GS  TF A+ EA+ F+K W+PFC+K  +EPR+PE++F  K+   KDK    + +    +K+ Y + K R+
Sbjct:  121 YRILIVVRVVSLALFLFWRIRN-----PNNKALWLWLLSVICELWFAFSWLLDQIPKLFPVNHATDIEALKATFETPNPDNPTGKSDLPGIDVFVSTADAEKEPPLVTANTILSILSVDYPVEKLSVYISDDGGSLVTFEAIAEAASFAKIWVPFCRKHKIEPRNPESYFGLKRDPYKDKVRHDFVRERRYVKRAYDEFKVRV 318          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 67/200 (33.50%), Postives = 116/200 (58.00%), Query Frame = 2
Query:   68 RVSHKVFAATC----FVGICL-ILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            R+SHK +         +G+   +L+YR+++  + +        W+  F  +  FSL W+I   ++WS    +P+ + L+ R  + LP +D+FV TAD + E P + ++TVLS+++ NYP  KL+ Y+SDD  S  T+++L EAS F K W PFCKK++V  R+P  +F   L   D D+ +++    +K++Y  +  ++E
Sbjct:   14 RISHKSYVLRAVDLTILGLLYSLLLYRILHISENDN------VWLLAFFCESCFSLVWLIFTCLKWSPAEDIPYINTLNERVHD-LPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYFLNPLVATD-DSVFSKDWKMMKREYVKLCRKVE 205          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 69/216 (31.94%), Postives = 110/216 (50.93%), Query Frame = 2
Query:   29 AMVPLFETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKL--------GEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            A  PLF T + K  + H          I ++  +      K   G    W W    + D +F   W++ Q  + S    +P    L+ RH   LPGVD+FV T DP+ EP    ++T+LS+++ +YP ++ + YLSDD G+   + A++E + F++ W+PFC+K  VEPRSPE +FA K         GE   D         ++++Y++ K RI+
Sbjct:   79 ARPPLFRTYKVKGSILHPYRFLILLRLIAIVAFFAWRVRHKNRDGV---WLWTMSMVGDVWFGFSWVLNQLPKLSPIKRVPDLAALADRHSGDLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYFAMKTQAYKGGVPGELMSDHR------RVRREYEEFKVRID 285          
The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CESA4_ORYSI2.271e-3036.36Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA2_ARATH2.966e-3034.46Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA9_ARATH3.874e-3035.03Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA5_ARATH8.630e-3033.90Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CSLB2_ARATH3.279e-2937.58Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CESA6_ARATH4.283e-2933.90Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CSLF1_ORYSJ1.246e-2832.09Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLD6_ARATH1.246e-2833.50Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLB5_ARATH2.126e-2833.50Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLF2_ORYSJ3.626e-2831.94Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC34107G04EF PostHarvP1 Citrus clementina cDNA clone C34107G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bp
GAAAACTGGAATTTGTGCTATAGAAGAAGCTATGGTACCACTTTTCGAGA
CTAAGGAGGCGAAGGCTAGGGTTTCTCACAAGGTGTTCGCAGCAACATGT
TTTGTGGGAATTTGTTTGATATTGATTTACAGATTGGTTAACTTTCCAAA
AGAAGAACAAGGAGGAAGAAGGAGATGGGCTTGGATTGGCATTTTCATGG
CTGATTTTTTTTTCAGTTTGTTCTGGATCATCACCCAGTCTGTTCGTTGG
AGTGTAAGACACCATTTGCCTTTCAAAGACAGACTCTCCCTAAGACATGA
GGAGAAGTTACCGGGAGTTGACATTTTCGTGTGCACGGCGGACCCAATCT
CAGAGCCACCAACGTTGGTGATTAGTACTGTCTTATCCGTCATGTCATAT
AACTATCCACCGGAAAAATTGAGTGTTTATTTGTCTGATGATGCTGGTTC
AGAATTCACATTTTATGCTCTGTTAGAGGCCTCTCATTTCTCAAAGTATT
GGATACCGTTCTGCAAAAAATTCGATGTTGAACCAAGGTCACCAGAAGCC
TGGTTTGCTAAAAAACTTGGTGAGAAAGATAAAGATACCACTTATACTCA
AGCGTGTCTAACTATCAAGAAACAATACCAAGACATGAAAACCCGTATTG
AATTGGCCATTGCAAAGGGCAGCATTTCGAAAGAAACAGGAAATCACACA
GGGGATCTCTGAATGGAATGTAAAGTA
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