FC931673

Overview
NameFC931673
Unique NameFC931673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 66/195 (33.85%), Postives = 109/195 (55.90%), Query Frame = 2
Query:  101 FVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWS----------VRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLG-EKDKD-TTYTQACLTIKKQYQDMKTRI 649
            FV +C  L +R+ N P E+      W W+   + + +F   WI+ Q  +            +R         +      LPG+D+FV TADP  EPP +  +T+LS+++ +YP EK+S YLSDD G+  +F A+ EA+ F+  W+PFC+K ++EPR+P+++F+ K+   K+K    + +    IK++Y + K RI
Sbjct:  279 FVVLCFFLTWRIRN-PNEDA----IWLWLMSIICELWFGFSWILDQIPKLCPINRSTDLEVLRDKFDMPSPSNPTGRSDLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYFSLKIDPTKNKSRIDFVKDRRKIKREYDEFKVRI 468          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 67/215 (31.16%), Postives = 115/215 (53.49%), Query Frame = 2
Query:   38 PLFETKEAKARVSH--KVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE-----KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKK----LGEKDKDTTYTQACLTIKKQYQDMKTRI 649
            P+F T++ K  + H  +V      +   L +I+R+     E +     W W+     +F+F   W++ Q  + +  + +P    L  R +       LPG+DIFV TADPI EP     +++LS+++ +YP ++ + YLSDD+G   T+ A+ EA+ F+  W+PFC+K  +EPR PE++F  K    +G   ++  +      ++K+Y D K RI
Sbjct:   91 PVFRTEKIKGVLLHPYRVLIFVRLIAFTLFVIWRI-----EHKNPDAMWLWVTSIAGEFWFGFSWLLDQLPKLNPINRVPDLAVLRRRFDHADGTSSLPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYFELKSHPYMGRAQEE--FVNDRRRVRKEYDDFKARI 298          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 68/203 (33.50%), Postives = 108/203 (53.20%), Query Frame = 2
Query:   77 HKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK----------LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLG--EKDKDTTYTQACLTIKKQYQDMKTRI 649
            +++  A   V + L L +R V  P  E      W W      + +F+L W++ Q  +    + L     L  R E            LPG+D+FV TADP  EPP +  +T+LS+++ +YP EKL+ YLSDD G+  TF AL + + F+  W+PFC+K ++EPR+PEA+F +K    +      + +    +K++Y + K RI
Sbjct:  317 YRLLIALRLVALGLFLTWR-VRHPNREA----MWLWGMSTTCELWFALSWLLDQLPKLCPVNRLTDLGVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYFGQKRNFLKNKVRLDFVRERRRVKREYDEFKVRI 514          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 69/209 (33.01%), Postives = 113/209 (54.07%), Query Frame = 2
Query:   59 AKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK----------LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFA--KKLGEKDKDTTYTQACLTIKKQYQDMKTRI 649
            AK    +++      V +   L +R+ N P E+      W W    + + +F+  WI+    + +  +       L  + E+           LPGVD+FV TADP  EPP +  +T+LS+++ +YP EKLS Y+SDD G+  TF A+ EA  F++YW+PFC+K D+EPR+P+++F+  K   +  K   + +    IK++Y + K RI
Sbjct:  176 AKILSPYRLLIVIRLVIVFFFLWWRITN-PNEDA----MWLWGLSIVCEIWFAFSWILDILPKLNPINRATDLAALHDKFEQPSPSNPTGRSDLPGVDVFVSTADPEKEPPLVTANTLLSILAVDYPIEKLSAYISDDGGAILTFEAMAEAVRFAEYWVPFCRKHDIEPRNPDSYFSIKKDPTKNKKRQDFVKDRRWIKREYDEFKVRI 379          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 65/205 (31.71%), Postives = 112/205 (54.63%), Query Frame = 2
Query:   77 HKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK----------LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKK----LGEKDKDTTYTQACLTIKKQYQDMKTRI 649
            +++     FV + L L++R+ N P  +      W W    + +F+F+  W++ Q  + +  +       L  + E            LPG+D+F+ TADP  EP  +  +T+LS+++  YP EKL VY+SDD G+  TF ++ EA  F+K W+PFC+K  +EPR+P+++F +K     G+K  D  + +    IK++Y + K R+
Sbjct:  154 YRLLVLVRFVALFLFLVWRVTN-PNMDA----LWLWGISIVCEFWFAFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRSDLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPD--FVKDRRWIKREYDEFKIRV 351          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 65/205 (31.71%), Postives = 112/205 (54.63%), Query Frame = 2
Query:   77 HKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK----------LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKK----LGEKDKDTTYTQACLTIKKQYQDMKTRI 649
            +++     FV + L L++R+ N P  +      W W    + +F+F+  W++ Q  + +  +       L  + E            LPG+D+F+ TADP  EP  +  +T+LS+++  YP EKL VY+SDD G+  TF ++ EA  F+K W+PFC+K  +EPR+P+++F +K     G+K  D  + +    IK++Y + K R+
Sbjct:  154 YRLLVLVRFVALFLFLVWRVTN-PNMDA----LWLWGISIVCEFWFAFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRSDLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPD--FVKDRRWIKREYDEFKIRV 351          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 62/170 (36.47%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  176 WAWIGIFMADFFFSLFWIITQSVRWSVRHHLP----FKDRLSL------RHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF-AKKLGEKDK-DTTYTQACLTIKKQYQDMKTRI 649
            W W    + + +F L W++ Q  +    +        KD+              LPG+DIFV TADP  EPP +  +T+LS+++ +YP EKLS Y+SDD G+  TF A+ EA+ F+  W+PFC+K D+EPR+PE++F  K+   K+K  + + +    +K++Y + K RI
Sbjct:  343 WLWGMSVVCELWFGLSWLLDQLPKLCPVNRATDLAVLKDKFETPTPSNPNGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYDEFKVRI 512          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 62/170 (36.47%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  176 WAWIGIFMADFFFSLFWIITQSVRWSVRHHLP----FKDRLSL------RHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF-AKKLGEKDK-DTTYTQACLTIKKQYQDMKTRI 649
            W W    + + +F L W++ Q  +    +        KD+              LPG+DIFV TADP  EPP +  +T+LS+++ +YP EKLS Y+SDD G+  TF A+ EA+ F+  W+PFC+K D+EPR+PE++F  K+   K+K  + + +    +K++Y + K RI
Sbjct:  343 WLWGMSVVCELWFGLSWLLDQLPKLCPVNRATDLAVLKDKFETPTPSNPNGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYDEFKVRI 512          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 57/170 (33.53%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  176 WAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK----------LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLG--EKDKDTTYTQACLTIKKQYQDMKTRI 649
            W W      + +F+  W++    +    H       L+ R E            LPG+D+FV +ADP  EPP +  +T+LS+++ +YP EKL+ YLSDD G+  +F AL E + F++ W+PFC+K  VEPR PEA+F +K    +      + +    +K++Y + K R+
Sbjct:  354 WLWAMSVACEVWFAFSWLLDSLPKLCPVHRAADLAVLAERFESPTARNPKGRSDLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYFGQKRDFLKNKVRVDFVRERRKVKREYDEFKVRV 523          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 58/170 (34.12%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  176 WAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHE----------EKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFA-KKLGEKDK-DTTYTQACLTIKKQYQDMKTRI 649
            W W    + + +F+L W++ Q  +    +     + L  + E            LPG+D+FV TADP  EPP +  +T+LS+++ +YP EKL+ Y+SDD G+  TF A+ EA+ F+  W+PFC+K ++EPR+P+++F+ K+   K+K    + +    +K++Y + K RI
Sbjct:  321 WLWGMSVVCELWFALSWLLDQLPKLCPINRATDLNVLKEKFETPTPSNPTGKSDLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFSLKRDPYKNKVKADFVKDRRRVKREYDEFKVRI 490          
The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLD4_ARATH8.077e-2833.85Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLF6_ORYSJ2.350e-2731.16Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLD5_ARATH5.235e-2733.50Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD1_ARATH5.235e-2733.01Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD5_ORYSJ1.989e-2631.71Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI1.989e-2631.71Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD2_ORYSJ5.788e-2636.47Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI5.788e-2636.47Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD4_ORYSJ8.358e-2533.53Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD3_ARATH1.092e-2434.12Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34107G04EF PostHarvP1 Citrus clementina cDNA clone C34107G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bp
GAAAACTGGAATTTGTGCTATAGAAGAAGCTATGGTACCACTTTTCGAGA
CTAAGGAGGCGAAGGCTAGGGTTTCTCACAAGGTGTTCGCAGCAACATGT
TTTGTGGGAATTTGTTTGATATTGATTTACAGATTGGTTAACTTTCCAAA
AGAAGAACAAGGAGGAAGAAGGAGATGGGCTTGGATTGGCATTTTCATGG
CTGATTTTTTTTTCAGTTTGTTCTGGATCATCACCCAGTCTGTTCGTTGG
AGTGTAAGACACCATTTGCCTTTCAAAGACAGACTCTCCCTAAGACATGA
GGAGAAGTTACCGGGAGTTGACATTTTCGTGTGCACGGCGGACCCAATCT
CAGAGCCACCAACGTTGGTGATTAGTACTGTCTTATCCGTCATGTCATAT
AACTATCCACCGGAAAAATTGAGTGTTTATTTGTCTGATGATGCTGGTTC
AGAATTCACATTTTATGCTCTGTTAGAGGCCTCTCATTTCTCAAAGTATT
GGATACCGTTCTGCAAAAAATTCGATGTTGAACCAAGGTCACCAGAAGCC
TGGTTTGCTAAAAAACTTGGTGAGAAAGATAAAGATACCACTTATACTCA
AGCGTGTCTAACTATCAAGAAACAATACCAAGACATGAAAACCCGTATTG
AATTGGCCATTGCAAAGGGCAGCATTTCGAAAGAAACAGGAAATCACACA
GGGGATCTCTGAATGGAATGTAAAGTA
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