FC931673

Overview
NameFC931673
Unique NameFC931673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 56/197 (28.43%), Postives = 108/197 (54.82%), Query Frame = 2
Query:   77 HKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKK----LGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            +++      + + L L +RL     + +     W W      DF+F + W++ Q+ + +    +P    L  R ++  LPG+D+F+ T DP+ EP    ++++LS+++ +YP ++ + YLSDD  S   +  L+E + F+  W+PFC+K  VEPR+PE++FA K     G    +  +    L ++++Y++ K R++
Sbjct:   78 YRLLTLVRLIAVVLFLAWRL-----KHRDSDAMWLWWISIAGDFWFGVTWLLNQASKLNPVKRVPDLSLLRRRFDDGGLPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYFAAKAAPYAGPALPEEFFGDRRL-VRREYEEFKARLD 268          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 59/192 (30.73%), Postives = 106/192 (55.21%), Query Frame = 2
Query:  110 ICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHE----------EKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFA-KKLGEKDK-DTTYTQACLTIKKQYQDMKTRI 649
            I ++++   + +  + Q     W W    + + +F+L W++ Q  +    +       L  + E            LPG D+FV TADP  EPP +  +T+LS+++  YP EKLS Y+SDD G+  TF A+ EA+ F+  W+PFC+K  +EPR+P+++F+ K+   K+K  + + +    +K+++ + K R+
Sbjct:  302 IRIVVLALFLTWRVKHQNPDAVWLWGMSVVCELWFALSWLLDQLPKLCPINRATDLQVLKEKFETPTASNPTGKSDLPGFDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHAIEPRNPDSYFSLKRDPYKNKVKSDFVKDRRRVKREFDEFKVRV 493          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 66/215 (30.70%), Postives = 115/215 (53.49%), Query Frame = 2
Query:   41 LFETKEAKARVSH--KVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHE-----EKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKK----LGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            LF T   +  + H  ++      V I L  I+R +  P  +  G   W WI + + DF+F + W++ Q  +      +P  + L  + +       LPG+D+F+ T DPI+EP    ++ +LS+++ +YP +K + YLSDD GS   +  LLE + F+  W+PFC+K  +EPR+PE++FA K     G   +D  +      ++++Y + K R++
Sbjct:   78 LFRTFTVRGILLHPYRLLTLVRLVAIVLFFIWR-IRHPYAD--GMFFW-WISV-IGDFWFGVSWLLNQVAKLKPIRRVPDLNLLQQQFDLPDGNSNLPGLDVFINTVDPINEPMIYTMNAILSILAADYPVDKHACYLSDDGGSIIHYDGLLETAKFAALWVPFCRKHSIEPRAPESYFAVKSRPYAGSAPED--FLSDHRYMRREYDEFKVRLD 285          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 62/185 (33.51%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  104 VGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPP--EKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            + I  +L+  L++    + G   R A +     + +F+  W++  + +WS      F + L+ R +E LP VD+FV TADP+ EPP + ++TVLS+++ +YP   EKL+ Y+SDD  S  T YAL EA+ F++ W+PFC++  V  R+P  +F+        D  + +    +K +Y+ +  RIE
Sbjct:   27 LAILFLLLALLLHRVLHDSGAPWRRAALA---CEAWFTFMWLLNVNAKWSPVRFDTFPENLAERIDE-LPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPEFGPADGKFLEDWTFMKSEYEKLVHRIE 207          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 61/194 (31.44%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  104 VGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLP----FKDRLSL------RHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF-AKKLGEKDK-DTTYTQACLTIKKQYQDMKTRI 649
            V + L L++R+     + Q     W W    + + +F+L W++ Q  +    +        KD+           +  LPG+DIFV TADP  EP  +  +T+LS+++ +YP +KL+ Y+SDD G+  TF A+ EA+ F+  W+PFC+K ++EPR+P+++F  K+   K+K    + +    +K++Y + K R+
Sbjct:  275 VALGLFLMWRI-----KHQNEDAIWLWGMSIVCELWFALSWVLDQLPKLCPINRATDLSVLKDKFETPTPSNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDPFKNKVKGDFVKDRRRVKREYDEFKVRV 463          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 61/194 (31.44%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  104 VGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLP----FKDRLSL------RHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF-AKKLGEKDK-DTTYTQACLTIKKQYQDMKTRI 649
            V + L L++R+     + Q     W W    + + +F+L W++ Q  +    +        KD+           +  LPG+DIFV TADP  EP  +  +T+LS+++ +YP +KL+ Y+SDD G+  TF A+ EA+ F+  W+PFC+K ++EPR+P+++F  K+   K+K    + +    +K++Y + K R+
Sbjct:  275 VALGLFLMWRI-----KHQNEDAIWLWGMSIVCELWFALSWVLDQLPKLCPINRATDLSVLKDKFETPTPSNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDPFKNKVKGDFVKDRRRVKREYDEFKVRV 463          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 57/177 (32.20%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE-----KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDKDT-TYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            W+     + + +  W+I Q  + S  + + + DRL+ R+E+     +L GVD+FV  AD   EPP    +TVLSV++ +YP   ++ Y+ DD      F +L EA+ F++ WIPFC++  VEPR+PE +FA+ +   +D+   ++ +    +K++Y++ K R+    A+     E G
Sbjct:   77 WVTSVACELWLAASWLIAQLPKLSPANRVTYLDRLASRYEKGGEASRLAGVDVFVAAADAAREPPLATANTVLSVLAADYPAGGVACYVHDDGADMLVFESLFEAAGFARRWIPFCRRHGVEPRAPELYFARGVDYLRDRAAPSFVKDRRAMKREYEEFKVRMNHLAARARKVPEEG 253          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 60/171 (35.09%), Postives = 94/171 (54.97%), Query Frame = 2
Query:   80 KVFAATCFVGICLILI-------YRLVNFPKEEQGG----RRRWAWIGIFMADFFFSLFWIITQSVR-WSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF 556
            K++  T FV I + ++       Y        + GG    +    W      + +F+  W++ Q  +   VR  +   D  +L  +  LP +D+FV TADP  EPP    +TVLS+++  YP  K++ Y+SDDAG+E T  A++EA+ F+  W+PFC+K  VEPR+PEA+F
Sbjct:   57 KLYRLTIFVRIAIFVLFFKWRITYAARAISSTDAGGIGMSKAATFWTASIAGELWFAFMWVLDQLPKTMPVRRAV---DVTALNDDTLLPAMDVFVTTADPDKEPPLATANTVLSILAAGYPAGKVTCYVSDDAGAEVTRGAVVEAARFAALWVPFCRKHGVEPRNPEAYF 224          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 50/117 (42.74%), Postives = 79/117 (67.52%), Query Frame = 2
Query:  308 LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKD---TTYTQACLTIKKQYQDMKTRI 649
            LPG+D+FV TADP  EP     +T+LS+++ +YP EKL+ Y+SDD G+  TF A+ EA+ F+  W+PFCKK D+EPR+P+++F+ K G+  K      + +    +K+++ + K RI
Sbjct:  378 LPGLDVFVSTADPEKEPVLTTATTILSILAVDYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCKKHDIEPRNPDSYFSVK-GDPTKGKRRNDFVKDRRRVKREFDEFKVRI 493          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 64/223 (28.70%), Postives = 110/223 (49.33%), Query Frame = 2
Query:   14 CAIEEAMVPL-FETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRH-------EEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE--KDKDTTYTQACLTIKKQYQDMKTRIE 652
            C  E+   PL F +   K  + H  + A  F  +  +L++    +          W W      D +F   W++ Q  +++    +P  D  +LR          +LPG+D+FV TADPI EP    ++ VLS+++ +YP ++ + YLSDD+G+   + AL+E + F+  W+PFC+K  +EPRSPE++F  +           +      +  +Y + K R+E
Sbjct:   66 CGGEDGRRPLLFRSYRVKGSLLHP-YRALIFARLIAVLLF--FGWRIRHNNSDIMWFWTMSVAGDVWFGFSWLLNQLPKFNPVKTIP--DLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFELEAPSYTGSAQEEFKNDSRIVHLEYDEFKVRLE 283          
The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLF9_ORYSJ2.432e-2428.43Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLD2_ARATH3.176e-2430.73Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLF8_ORYSJ4.148e-2430.70Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLH1_ORYSJ7.076e-2433.51Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLD1_ORYSJ7.076e-2431.44Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI7.076e-2431.44Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CESAB_ORYSJ1.576e-2332.20Putative cellulose synthase A catalytic subunit 11... [more]
CSLF7_ORYSJ2.059e-2335.09Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLD3_ORYSJ2.059e-2342.74Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLF3_ORYSI2.689e-2328.70Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionC34107G04EF PostHarvP1 Citrus clementina cDNA clone C34107G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bp
GAAAACTGGAATTTGTGCTATAGAAGAAGCTATGGTACCACTTTTCGAGA
CTAAGGAGGCGAAGGCTAGGGTTTCTCACAAGGTGTTCGCAGCAACATGT
TTTGTGGGAATTTGTTTGATATTGATTTACAGATTGGTTAACTTTCCAAA
AGAAGAACAAGGAGGAAGAAGGAGATGGGCTTGGATTGGCATTTTCATGG
CTGATTTTTTTTTCAGTTTGTTCTGGATCATCACCCAGTCTGTTCGTTGG
AGTGTAAGACACCATTTGCCTTTCAAAGACAGACTCTCCCTAAGACATGA
GGAGAAGTTACCGGGAGTTGACATTTTCGTGTGCACGGCGGACCCAATCT
CAGAGCCACCAACGTTGGTGATTAGTACTGTCTTATCCGTCATGTCATAT
AACTATCCACCGGAAAAATTGAGTGTTTATTTGTCTGATGATGCTGGTTC
AGAATTCACATTTTATGCTCTGTTAGAGGCCTCTCATTTCTCAAAGTATT
GGATACCGTTCTGCAAAAAATTCGATGTTGAACCAAGGTCACCAGAAGCC
TGGTTTGCTAAAAAACTTGGTGAGAAAGATAAAGATACCACTTATACTCA
AGCGTGTCTAACTATCAAGAAACAATACCAAGACATGAAAACCCGTATTG
AATTGGCCATTGCAAAGGGCAGCATTTCGAAAGAAACAGGAAATCACACA
GGGGATCTCTGAATGGAATGTAAAGTA
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