FC931673

Overview
NameFC931673
Unique NameFC931673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 60/189 (31.75%), Postives = 100/189 (52.91%), Query Frame = 2
Query:   14 CAIEEAMVPL-FETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRH-------EEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF 556
            C  E+   PL F +   K  + H  + A  F  +  +L++    +          W W      D +F   W++ Q  +++    +P  D  +LR          +LPG+D+FV TADPI EP    ++ VLS+++ +YP ++ + YLSDD+G+   + AL+E + F+  W+PFC+K  +EPRSPE++F
Sbjct:   66 CGGEDGRRPLLFRSYRVKGSLLHP-YRALIFARLIAVLLF--FGWRIRHNNSDIMWFWTMSVAGDVWFGFSWLLNQLPKFNPVKTIP--DLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23
Identity = 62/218 (28.44%), Postives = 108/218 (49.54%), Query Frame = 2
Query:   41 LFETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE------KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKK--------LGEKDKDTTYTQACLTIKKQYQDMKTRIE 652
            LF T + K  + H        + + LI I     +    +     W W      D +F   W + Q  + +    +     L+ R +       +LPGVD+FV T DP+ EP    ++++LS+++ +YP ++ + YLSDD G+   + A++E + F++ W+PFC+K  VEPR+PE++FA K         GE   D         ++++Y++ K RI+
Sbjct:   83 LFRTYKVKGSILHPY---RFLILVRLIAIVAFFAWRVRHKNRDGAWLWTMSMAGDVWFGFSWALNQLPKLNPIKRVADLAALADRQQHGTSGGGELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYFAMKTQAYRGGVAGELMSDRR------RVRREYEEFKVRID 291          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRL---------SLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPP--EKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKD---KDTTYTQACLTIKKQYQDMKTRIE 652
            W    + + +F+    +  S +WS    +   + L         +     +LP VD+ V TADP  EPP + ++TVLS+++ +YP   E+L+ Y+SDD  S  T +AL EA+ F+  W+PFC+++ V  R+P  +F+     +     D  +      +K +Y  +  RI+
Sbjct:   83 WRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIK 253          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRL---------SLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPP--EKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKD---KDTTYTQACLTIKKQYQDMKTRIE 652
            W    + + +F+    +  S +WS    +   + L         +     +LP VD+ V TADP  EPP + ++TVLS+++ +YP   E+L+ Y+SDD  S  T +AL EA+ F+  W+PFC+++ V  R+P  +F+     +     D  +      +K +Y  +  RI+
Sbjct:   83 WRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIK 253          
The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLF3_ORYSJ3.512e-2331.75Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF4_ORYSJ4.586e-2328.44Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLH2_ORYSJ1.866e-1629.24Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI1.866e-1629.24Cellulose synthase-like protein H2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC34107G04EF PostHarvP1 Citrus clementina cDNA clone C34107G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bp
GAAAACTGGAATTTGTGCTATAGAAGAAGCTATGGTACCACTTTTCGAGA
CTAAGGAGGCGAAGGCTAGGGTTTCTCACAAGGTGTTCGCAGCAACATGT
TTTGTGGGAATTTGTTTGATATTGATTTACAGATTGGTTAACTTTCCAAA
AGAAGAACAAGGAGGAAGAAGGAGATGGGCTTGGATTGGCATTTTCATGG
CTGATTTTTTTTTCAGTTTGTTCTGGATCATCACCCAGTCTGTTCGTTGG
AGTGTAAGACACCATTTGCCTTTCAAAGACAGACTCTCCCTAAGACATGA
GGAGAAGTTACCGGGAGTTGACATTTTCGTGTGCACGGCGGACCCAATCT
CAGAGCCACCAACGTTGGTGATTAGTACTGTCTTATCCGTCATGTCATAT
AACTATCCACCGGAAAAATTGAGTGTTTATTTGTCTGATGATGCTGGTTC
AGAATTCACATTTTATGCTCTGTTAGAGGCCTCTCATTTCTCAAAGTATT
GGATACCGTTCTGCAAAAAATTCGATGTTGAACCAAGGTCACCAGAAGCC
TGGTTTGCTAAAAAACTTGGTGAGAAAGATAAAGATACCACTTATACTCA
AGCGTGTCTAACTATCAAGAAACAATACCAAGACATGAAAACCCGTATTG
AATTGGCCATTGCAAAGGGCAGCATTTCGAAAGAAACAGGAAATCACACA
GGGGATCTCTGAATGGAATGTAAAGTA
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