FC931673
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23 Identity = 60/189 (31.75%), Postives = 100/189 (52.91%), Query Frame = 2 Query: 14 CAIEEAMVPL-FETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRH-------EEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWF 556 C E+ PL F + K + H + A F + +L++ + W W D +F W++ Q +++ +P D +LR +LPG+D+FV TADPI EP ++ VLS+++ +YP ++ + YLSDD+G+ + AL+E + F+ W+PFC+K +EPRSPE++F Sbjct: 66 CGGEDGRRPLLFRSYRVKGSLLHP-YRALIFARLIAVLLF--FGWRIRHNNSDIMWFWTMSVAGDVWFGFSWLLNQLPKFNPVKTIP--DLTALRQYCDLADGSYRLPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23 Identity = 62/218 (28.44%), Postives = 108/218 (49.54%), Query Frame = 2 Query: 41 LFETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEE------KLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKK--------LGEKDKDTTYTQACLTIKKQYQDMKTRIE 652 LF T + K + H + + LI I + + W W D +F W + Q + + + L+ R + +LPGVD+FV T DP+ EP ++++LS+++ +YP ++ + YLSDD G+ + A++E + F++ W+PFC+K VEPR+PE++FA K GE D ++++Y++ K RI+ Sbjct: 83 LFRTYKVKGSILHPY---RFLILVRLIAIVAFFAWRVRHKNRDGAWLWTMSMAGDVWFGFSWALNQLPKLNPIKRVADLAALADRQQHGTSGGGELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYFAMKTQAYRGGVAGELMSDRR------RVRREYEEFKVRID 291
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3) HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16 Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRL---------SLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPP--EKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKD---KDTTYTQACLTIKKQYQDMKTRIE 652 W + + +F+ + S +WS + + L + +LP VD+ V TADP EPP + ++TVLS+++ +YP E+L+ Y+SDD S T +AL EA+ F+ W+PFC+++ V R+P +F+ + D + +K +Y + RI+ Sbjct: 83 WRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIK 253
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16 Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 182 WIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRL---------SLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPP--EKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKD---KDTTYTQACLTIKKQYQDMKTRIE 652 W + + +F+ + S +WS + + L + +LP VD+ V TADP EPP + ++TVLS+++ +YP E+L+ Y+SDD S T +AL EA+ F+ W+PFC+++ V R+P +F+ + D + +K +Y + RI+ Sbjct: 83 WRVALVCEAWFAALCALNVSAKWSPVRFVTRPENLVAEGRTPSTTAAEYGELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYFSSSSSPESGGPADRKFLDDWTFMKDEYDKLVRRIK 253 The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bpback to top |