FC931677

Overview
NameFC931677
Unique NameFC931677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C33_ARATH (Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 2
Query:  137 FHGPT----SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFI-------QVGRV------NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            FHG      SG+TA   I + + LVV N GDSR V+  +       A+ L+ D KP+L  E +RI K  G +       +V RV      +  L +ARA GD   K       +  +++  PD+S  +L + DEF+V+A DGIWD LS++++V  V
Sbjct:  206 FHGSVDCFCSGTTAVTLIKQGQYLVVGNVGDSRAVMGTRDSENTLVAVQLTVDLKPNLPAEAERIRKCRGRVFALRDEPEVCRVWLPNCDSPGLAMARAFGDFCLK-------DFGLISV-PDVSFRQLTEKDEFIVLATDGIWDVLSNEDVVAIV 353          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C79_ARATH (Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 2
Query:  140 HGPTSGSTACVAIIRDKQLVVANAGDSRCVLSR------KGQALNLSKDHKPDLEVEKDR------------ILKAGGFIQVGRVNGSLNLARAIGDVEFK---LNKSL---------PAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTN 556
            H    GS   + ++ D +L VAN GDSR VL +      +  AL LS +H   +E  +              +LK      V RV G + ++R+IGDV  K    NK           P ++ I++  P I+  +L  DD+FL+ A DG+W+ LS+QE V+ V++   N
Sbjct:  145 HIAAVGSCCLIGVVCDGKLYVANVGDSRAVLGKVIKATGEVNALQLSAEHNVSIESVRQEMHSLHPDDSHIVVLKHN----VWRVKGIIQVSRSIGDVYLKKSEFNKEPLYTKYRLREPMKRPILSWEPSITVHDLQPDDQFLIFASDGLWEQLSNQEAVEIVQNHPRN 309          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PDP1_PONAB ([Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial OS=Pongo abelii GN=PDP1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 55/171 (32.16%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRIL------KAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIV--------------------------TANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLT 553
            SG+TACVA +    L VAN GDSR +L  + +     AL LS DH    E E +R+       +A   ++  R+ G L   RA GDV+FK   S+  +K+++                          TA P+++   L   D+FLV+A DG+W+ +  Q++V  V + LT
Sbjct:  270 SGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSALTLSNDHNAQNERELERLKLEHPKSEAKSVVKQDRLLGLLMPFRAFGDVKFKW--SIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLT 438          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C72_ARATH (Probable protein phosphatase 2C 72 OS=Arabidopsis thaliana GN=At5g26010 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 52/152 (34.21%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  137 FHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGS-------------LNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            F+   SGST  VAI +   LV+AN GDSR VL    +     A+ L+ D  PD+  E +RI    G +   +   S             L ++RA GD   K +         V A P+IS   +   D+FLV+A DG+WD LS+ E+V  +
Sbjct:  140 FNCSFSGSTGVVAITQGDDLVIANLGDSRAVLGTMTEDGEIKAVQLTSDLTPDVPSEAERIRMCKGRVFAMKTEPSSQRVWLPNQNIPGLAMSRAFGDFRLKDHG--------VIAVPEISQHRITSKDQFLVLATDGVWDMLSNDEVVSLI 283          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C67_ARATH (Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 54/154 (35.06%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  155 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQ----ALNLSKDHKPDLE-----------------VEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNK-SLPAE--KQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRD 544
            GS     +I +  + +AN GDSR VL R  +    A+ LS +H  +LE                 V K R+ +  G IQV R  G   L RA  + E  L K  LP    K I++A+P ++   L   DEF+++A DG+W+ LS+QE VD V +
Sbjct:  140 GSCCLAGVICNGLVYIANTGDSRAVLGRSERGGVRAVQLSVEHNANLESARQELWSLHPNDPTILVMKHRLWRVKGVIQVTRSIGDAYLKRAEFNREPLLPKFRLPEHFTKPILSADPSVTITRLSPQDEFIILASDGLWEHLSNQEAVDIVHN 293          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 54/158 (34.18%), Postives = 76/158 (48.10%), Query Frame = 2
Query:  155 GSTACVAIIRDKQLVVANAGDSRCVLSRKG------QALNLSKDHK-----------------PDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPA-------EKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            G+   V I+ +  L VANAGDSR VL +        +A+ LS +H                  P++ V K ++ +  G IQV R  G   L RA    EF     LP        EK I+ A P I+  ++  +D+FL+ A DG+W+ LS+QE VD V
Sbjct:  152 GACCLVGIVCNGLLYVANAGDSRVVLGKVANPFKELKAVQLSTEHNASIESVREELRLLHPDDPNIVVLKHKVWRVKGIIQVSRSIGDAYLKRA----EFNQEPLLPKFRVPERFEKPIMRAEPTITVHKIHPEDQFLIFASDGLWEHLSNQEAVDIV 305          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: CYAA_NEUCR (Adenylate cyclase OS=Neurospora crassa GN=cr-1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 56/154 (36.36%), Postives = 84/154 (54.55%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSR-KGQALNLSKDHKPDLEVEKDRILKAGGFI-QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLA 607
            SG  A VA + + +L VAN GD + +L +  G    L+K H P   VE+ RI  AGG++ + GR+N  LN++RA G  E      LPA    V A PDI+   + D DE ++IA   +W+ L  + +VD  R+  ++  K S   +K+ D  +A
Sbjct: 1673 SGCVATVAYLSELKLYVANVGDVQGMLIQANGSFKMLTKKHDPADPVERSRIRNAGGWVSRNGRLNDVLNVSRAFGYTEL-----LPA----VQAAPDITEHTIDDKDETVLIASKELWEHLRPELIVDVARECRSDLMKAS---QKLRDLAIA 1814          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C03_ORYSJ (Probable protein phosphatase 2C 3 OS=Oryza sativa subsp. japonica GN=Os01g0513100 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 49/142 (34.51%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  143 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALN-LSKDHKPDLEV-EKDRILKAGGFIQVGRVN--------------GSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQ 520
            G TSG+TA   II    + VA+ GDSRC+L  +G A++ L+ DH+ +  V E++R+  +GG  +VGR++              G L L+R+IGD++           + +   P +  ++L +    L+IA DGIWD LSS+
Sbjct:  184 GQTSGTTATFVIIDGWTITVASVGDSRCILDAQGGAVSLLTVDHRLEENVEERERVTASGG--EVGRLSVVGGAEIGPLRCWPGGLCLSRSIGDIDV---------GEFIVPVPYVKQVKLSNAGGRLIIASDGIWDALSSE 314          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PDP1_MOUSE ([Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial OS=Mus musculus GN=Pdp1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRIL------KAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIV--------------------------TANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLT 553
            SG+TACVA +    L VAN GDSR +L  + +     A+ LS DH    E E +R+       +A   ++  R+ G L   RA GDV+FK   S+  +K+++                          TA P+++   L   D+FLV+A DG+W+ +  Q++V  V + LT
Sbjct:  270 SGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKW--SIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLT 438          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PDP1_HUMAN ([Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial OS=Homo sapiens GN=PDP1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRIL------KAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIV--------------------------TANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLT 553
            SG+TACVA +    L VAN GDSR +L  + +     A+ LS DH    E E +R+       +A   ++  R+ G L   RA GDV+FK   S+  +K+++                          TA P+++   L   D+FLV+A DG+W+ +  Q++V  V + LT
Sbjct:  270 SGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHPKSEAKSVVKQDRLLGLLMPFRAFGDVKFKW--SIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLT 438          
The following BLAST results are available for this feature:
BLAST of FC931677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
P2C33_ARATH8.723e-1335.90Probable protein phosphatase 2C 33 OS=Arabidopsis ... [more]
P2C79_ARATH1.139e-1231.95Probable protein phosphatase 2C 79 OS=Arabidopsis ... [more]
PDP1_PONAB1.943e-1232.16[Pyruvate dehydrogenase [acetyl-transferring]]-pho... [more]
P2C72_ARATH2.538e-1234.21Probable protein phosphatase 2C 72 OS=Arabidopsis ... [more]
P2C67_ARATH2.538e-1235.06Probable protein phosphatase 2C 67 OS=Arabidopsis ... [more]
P2C48_ARATH2.538e-1234.18Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
CYAA_NEUCR2.538e-1236.36Adenylate cyclase OS=Neurospora crassa GN=cr-1 PE=... [more]
P2C03_ORYSJ3.315e-1234.51Probable protein phosphatase 2C 3 OS=Oryza sativa ... [more]
PDP1_MOUSE4.329e-1231.58[Pyruvate dehydrogenase [acetyl-transferring]]-pho... [more]
PDP1_HUMAN4.329e-1231.58[Pyruvate dehydrogenase [acetyl-transferring]]-pho... [more]

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Properties
Property NameValue
Genbank descriptionC34107G08EF PostHarvP1 Citrus clementina cDNA clone C34107G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931677 ID=FC931677; Name=FC931677; organism=Citrus clementina; type=EST; length=689bp
GAGAGAATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGA
TTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTT
GACGATTGGGCATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAAC
TTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGG
TTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCA
CTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAG
AATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTT
TAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGT
TTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTAT
TGAACTTTGTGATGATGATGAGTTTCTTGTCATAGCTTGTGATGGGATTT
GGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAATTA
ACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGGTG
CTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGATCT
TGGTTCAGTTTAAAATCTTTCTAATATGGTCCTTCTGCG
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