FC931677

Overview
NameFC931677
Unique NameFC931677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931677_ssr460 microsatellite FC931677_ssr460:460..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C61_ARATH (Probable protein phosphatase 2C 61 OS=Arabidopsis thaliana GN=At4g32950 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 50/147 (34.01%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVL---SRKGQA--LNLSKDHKPDLEVEKDRILKAGGFI-------QVGRV------NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            SG+TA +A+    Q++VAN GDSR V+   S  G+     L+ D KP +  E +RI K  G +        + RV         L ++RA GD   K           V A P +ST ++   D+FL++A DG+WD LS++E+   V
Sbjct:  138 SGTTAVLAVKHGNQVMVANLGDSRAVMIGTSEDGETKVAQLTNDLKPSVPSEAERIRKRNGRVLALESEPHILRVWLPTENRPGLAMSRAFGDFLLK--------SYGVIATPQVSTHQITSSDQFLLLASDGVWDVLSNEEVATVV 276          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  155 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQA------LNLSKDHKPDLEVEKDRI------------LKAGGFIQVGRVNGSLNLARAIGDVEFK---LNKSL---------PAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTN 556
            GS   V +I    L +AN GDSR VL R  +A      L LS +H   +E  +  +            LK      V RV G + ++R+IGDV  K    NK           P ++ I++  P I+  E+   D+FL+ A DG+W+ +S+QE VD V++   N
Sbjct:  147 GSCCLVGVICGGMLYIANVGDSRAVLGRAMKATGEVIALQLSAEHNVSIESVRQEMHSLHPDDSHIVMLKHN----VWRVKGLIQISRSIGDVYLKKAEFNKEPLYTKYRIREPFKRPILSGEPTITEHEIQPQDKFLIFASDGLWEQMSNQEAVDIVQNHPRN 306          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C73_ORYSJ (Probable protein phosphatase 2C 73 OS=Oryza sativa subsp. japonica GN=Os11g0109000 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 52/165 (31.52%), Postives = 80/165 (48.48%), Query Frame = 2
Query:   98 FDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFI-------QVGRV------NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            F+D   +   HS      SG+TA   + +   L++AN GDSR VL  +       ++ L+ D KP+L  E +RIL + G +        V R+         L +ARA GD   K +  +          P++   +L   D+FLV+A DGIWD LS++E++  V
Sbjct:  140 FEDVDEDLRQHSGIDCICSGTTAVTVVRQGDHLIIANLGDSRAVLCTRDSKDRPISVQLTTDLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPDQDAPGLAMARAFGDFCLKSHGLI--------CTPEVYYRKLSAKDDFLVLATDGIWDVLSNKEVIKIV 296          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  155 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQA------LNLSKDHKPDLE-----------------VEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAE---KQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            G+   V II    L +ANAGDSR VL R  +A      + LS +H   LE                 V K ++ +  G IQV R  G   L +A  + E  L K    E   K I+ A P I+  ++  +D+FL+ A DG+W+ LS+QE VD V
Sbjct:  151 GACCLVGIICSGLLYIANAGDSRVVLGRLEKAFKIVKAVQLSSEHNASLESVREELRSLHPNDPQIVVLKHKVWRVKGIIQVSRSIGDAYLKKAEFNREPLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGLWEHLSNQEAVDIV 304          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C15_ORYSJ (Probable protein phosphatase 2C 15 OS=Oryza sativa subsp. japonica GN=Os02g0567200 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  149 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEK-DRILKAGGFIQVGRVN--------------GSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQ 520
            +SG+T    II    + VA+ GDSRCVL  +G   +LS DH+ D   E+ DR+ ++GG   VGR+N              G L L+R+IGD +           Q +   P +  ++L      L+I+ DG+WD L+++
Sbjct:  137 SSGTTVTFVIIDGLFITVASVGDSRCVLEAEGSIYHLSADHRFDASKEEVDRVTESGG--DVGRLNVVGGAEIGPLRCWPGGLCLSRSIGDQDV---------GQFIVPVPYVKQVKLSTAGGRLIISSDGVWDVLTAE 264          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C01_ARATH (Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 55/165 (33.33%), Postives = 77/165 (46.67%), Query Frame = 2
Query:   98 FDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFI-------QVGRV------NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            F+    E   H +     SG TA   I +   L + N GDSR +L  K       A+ L+ D KPDL  E +RI +  G +       +V RV         L +ARA GD   K           V + P+ S   L D D+F+V+A DG+WD LS++E+V+ V
Sbjct:  166 FNAMDKELRSHPNLECFCSGCTAVTIIKQGSNLYMGNIGDSRAILGSKDSNDSMIAVQLTVDLKPDLPREAERIKQCKGRVFALQDEPEVSRVWLPFDNAPGLAMARAFGDFCLK--------DYGVISIPEFSHRVLTDRDQFIVLASDGVWDVLSNEEVVEVV 322          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C52_ARATH (Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana GN=At4g03415 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 51/147 (34.69%), Postives = 72/147 (48.98%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFI-------QVGRV------NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFV 538
            SGST    + +   L + N GDSR +L  K       A  L+ D KPDL  E +RI +  G +       +V RV         L +ARA GD   K        +  V + P+ +   L D D+F+V+A DG+WD LS++E+VD V
Sbjct:  194 SGSTGVTILKQGSNLFMGNIGDSRAILGSKDSNDSMVATQLTVDLKPDLPREAERIKRCKGRVFAMEDEPEVPRVWLPYDDAPGLAMARAFGDFCLK--------EYGVISVPEFTHRVLTDRDQFIVLASDGVWDVLSNEEVVDIV 332          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C33_ORYSJ (Probable protein phosphatase 2C 33 OS=Oryza sativa subsp. japonica GN=Os03g0301700 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 45/142 (31.69%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  143 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALN-LSKDHKPDLEV-EKDRILKAGGFIQVGRVN--------------GSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQ 520
            G  SG+TA + ++    + VA+ GDSRC+L  +G  ++ L+ DH+ +  V E++R+  +GG  +V R+N              G L L+R+IGD +           + +   P +  ++L +    L+IA DGIWD LSS+
Sbjct:  129 GEASGTTATLVVVDGFTVTVASVGDSRCILDTQGGVISLLTVDHRLEENVEERERVTASGG--EVSRLNLCGGQEVGPLRCWPGGLCLSRSIGDTDV---------GEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSE 259          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C73_ARATH (Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 51/184 (27.72%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFI-------------QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMI 649
            SG+TA   + + + + VAN GDSR VL+ +       A+ L+ D KP+L  EK+RI+   G +             Q       L ++RA GD   K       E  +V+  P+++   +   D F+++A DGIWD +S+QE ++ V            + E+   R       G   D+M+++
Sbjct:  176 SGTTALTIVRQGEVIYVANVGDSRAVLAMESDEGSLVAVQLTLDFKPNLPQEKERIIGCKGRVFCLDDEPGVHRVWQPDAETPGLAMSRAFGDYCIK-------EYGLVSV-PEVTQRHISTKDHFIILASDGIWDVISNQEAIEIVSSTAERPKAAKRLVEQAV-RAWKKKRRGYSMDDMSVV 350          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C14_ORYSJ (Probable protein phosphatase 2C 14 OS=Oryza sativa subsp. japonica GN=Os02g0471500 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFI-------QVGRV------NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICE 583
            SG+TA   + + + L++ N GDSR +L  + +     A+ L+ D KP++  E  RI +  G I       +V RV      +  L +ARA GD   K           + + P++S   + + DEF+V+A DG+WD LS+ E+V  V    +  +   ++ E
Sbjct:  259 SGTTAVAVLKQGRNLIIGNLGDSRAILGTRDKDNQLMAVQLTVDLKPNIPSEAQRIRQRRGRIFALPEEPEVARVWLPKYNSPGLAMARAFGDFCLK--------DYGLISMPEVSYHRITEKDEFVVLATDGVWDVLSNTEVVSIVNRATSRASAARLLVE 412          
The following BLAST results are available for this feature:
BLAST of FC931677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
P2C61_ARATH2.149e-1134.01Probable protein phosphatase 2C 61 OS=Arabidopsis ... [more]
P2C46_ARATH2.149e-1132.32Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C73_ORYSJ2.806e-1131.52Probable protein phosphatase 2C 73 OS=Oryza sativa... [more]
P2C38_ARATH2.806e-1135.06Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C15_ORYSJ4.787e-1133.09Probable protein phosphatase 2C 15 OS=Oryza sativa... [more]
P2C01_ARATH4.787e-1133.33Probable protein phosphatase 2C 1 OS=Arabidopsis t... [more]
P2C52_ARATH6.252e-1134.69Probable protein phosphatase 2C 52 OS=Arabidopsis ... [more]
P2C33_ORYSJ6.252e-1131.69Probable protein phosphatase 2C 33 OS=Oryza sativa... [more]
P2C73_ARATH8.165e-1127.72Probable protein phosphatase 2C 73 OS=Arabidopsis ... [more]
P2C14_ORYSJ8.165e-1129.63Probable protein phosphatase 2C 14 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC34107G08EF PostHarvP1 Citrus clementina cDNA clone C34107G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931677 ID=FC931677; Name=FC931677; organism=Citrus clementina; type=EST; length=689bp
GAGAGAATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGA
TTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTT
GACGATTGGGCATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAAC
TTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGG
TTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCA
CTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAG
AATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTT
TAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGT
TTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTAT
TGAACTTTGTGATGATGATGAGTTTCTTGTCATAGCTTGTGATGGGATTT
GGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAATTA
ACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGGTG
CTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGATCT
TGGTTCAGTTTAAAATCTTTCTAATATGGTCCTTCTGCG
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