FC931677

Overview
NameFC931677
Unique NameFC931677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931677_ssr460 microsatellite FC931677_ssr460:460..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 70/171 (40.94%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  149 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 661
            +SG+TA  A I  ++L++ANAGD R VL R+G+A+ LSKDHKP+   EK RI K GG +  G +NG L++ARAIGD   K  K        ++  P++   +L +DDEFL++ CDG+WD +SSQ  V   R +L           ++    L  +     CDN+T+I+V F
Sbjct:  181 SSGTTALTAFIFGRRLIIANAGDCRAVLGRRGRAIELSKDHKPNCTAEKVRIEKLGGVVYDGYLNGQLSVARAIGDWHMKGPKGSACP---LSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIARKELMIHNDPERCSRELVREALKRNT----CDNLTVIVVCF 344          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 72/170 (42.35%), Postives = 105/170 (61.76%), Query Frame = 2
Query:  152 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD--VEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILV 655
            SG+TA  AI+  + LVVANAGD R VLSR+G+A+ +S+DHKP    E+ RI  +GG +  G +NG LN+ARA+GD  +E    K   ++   + A P++ T +L ++DEFL+I CDG+WD   SQ  VDF R +L  E    V+C K     +  +   +  DN+T ++V
Sbjct:  189 SGTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHVFDGYLNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFARRRL-QEHNDPVMCSK---ELVEEALKRKSADNVTAVVV 354          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.134e-28
Identity = 65/173 (37.57%), Postives = 102/173 (58.96%), Query Frame = 2
Query:  143 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 661
            G   GSTA   ++  + L +A+ GDSR +LSR G     ++DH+P    E++RI  AGG ++  RV GSL ++RA+GD  +K     P E Q+V+A P+++ +   D+DEF+++A DG+WD LS  +L   V  +L     L ++C ++ D CL   +     DNMT ++V F
Sbjct:  151 GDPGGSTAVALLVSPRFLYLAHCGDSRALLSRSGSVAFCTEDHRPHRPRERERIHDAGGTVRRRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGLVTSRLRLGLDLELLCAQLLDTCLCKGS----LDNMTCMVVCF 319          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 2
Query:  149 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQL 550
            +SG+TA  A+I  +QL+VANAGD R VL RKG A+ +S+DH+P  + E +RI + GG+I+ G +NG L++ RA+GD + K+ +     +  + A P+     L +DDEFL+I CDGIWD +SSQ  V  VR  L
Sbjct:  176 SSGTTALAALIFGRQLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGGYIEDGYLNGVLSVTRALGDWDMKMPQ---GSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGL 306          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  149 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFKI 667
            +SG+TA  A+I  + L++ANAGD R VLSR G A+ +S DH+P    EK R+   GG++  G +NG L + RA+GD   +  K        ++A P++  I L  DDEFL+I  DGIWD  S+Q +VDF R +L     +   C ++ +  +   A     DN+T +LV F +
Sbjct:  159 SSGTTALTAMIFGRTLLIANAGDCRAVLSRCGTAIEMSVDHRPCSLSEKLRVESLGGYVDDGYLNGLLGVTRALGDWHLEGMKEAGNPGGPLSAEPELKMITLTKDDEFLIIGSDGIWDVFSNQNVVDFARRRLQEHNDVKSCCREIVEEAIKRGA----TDNLTAVLVSFHL 327          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PP2C4_YEAST (Protein phosphatase 2C homolog 4 OS=Saccharomyces cerevisiae GN=PTC4 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 80/203 (39.41%), Postives = 109/203 (53.69%), Query Frame = 2
Query:  116 EEGPHSDFHGPTSGSTACVA-IIRDKQLVVANAGDSRCVLSRKGQALN-LSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFK------------------LNKSLPAEKQIVTANPDISTIEL-CDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP--SAGGEGCDNMTMILV 655
            +E  +  F   + GSTA VA II ++ L VAN GDSRC+LS K   +  +S DHKP    E  RI   GG + +GRV G L L+RA  D +FK                  L    P ++  VT  PD+   ++    DEFLV+ACDGIWD  ++++L+ F++  L + TKL  I  K+ D  +A   S  G G DNMT I+V
Sbjct:  164 DEELYRHFANSSCGSTAVVACIINEESLYVANCGDSRCILSSKSNGIKTMSFDHKPQHIGELIRINDNGGTVSLGRVGGVLALSRAFSDFQFKRGVTYPHRRTKLTNITQNLTYGTPPQEAQVTVEPDVLMHKIDYSKDEFLVLACDGIWDIYNNKQLIHFIKYHLVSGTKLDTIITKLLDHGIAQANSNTGVGFDNMTAIIV 366          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C19_ORYSJ (Probable protein phosphatase 2C 19 OS=Oryza sativa subsp. japonica GN=Os02g0599700 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27
Identity = 74/170 (43.53%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  155 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 664
            GSTACV +IR  QL+V +AGDSRCVLSR GQA  LS DHKPD                               D   K N+ LP E Q++T NPDI T+++ DD EFLVIA +G+W  +++Q +VD   D+L    +  VICE++    L PS      DN T+ILV FK
Sbjct:  385 GSTACVVVIRGNQLIVGHAGDSRCVLSRNGQASALSVDHKPDR------------------------------DFACKKNERLPPEDQMLTCNPDILTMDITDDMEFLVIATEGLWCNMTNQNVVDHTHDRLLEGAEARVICEELVQFGL-PSG-----DNTTVILVLFK 518          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PPMBL_HUMAN (Probable protein phosphatase 1B-like OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 66/171 (38.60%), Postives = 99/171 (57.89%), Query Frame = 2
Query:  149 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 661
            T G TA V ++  + L +A+ GDSR VLSR G     ++DH+P    E++RI  AGG I+  RV GSL ++RA+GD  +K     P E Q+V+A P+++ +    +DEF+++A DG+WD +S   L   V  +L       ++C ++ D CL   +     DNMT ILV F
Sbjct:  160 TGGCTAVVLLVSPRFLYLAHCGDSRAVLSRAGAVAFSTEDHRPLRPRERERIHAAGGTIRRRRVEGSLAVSRALGDFTYKEAPGRPPELQLVSAEPEVAALARQAEDEFMLLASDGVWDTVSGAALAGLVASRLRLGLAPELLCAQLLDTCLCKGS----LDNMTCILVCF 326          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 71/170 (41.76%), Postives = 101/170 (59.41%), Query Frame = 2
Query:  155 GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 661
            G+TA  A+I  + L+VANAGD R VL RKG+A+++S+DHKP   +E+ R+ ++GGFI   G +N  L + RA+GD + KL       +  + + P+I  I L +DDEFLVI CDGIWD L+SQE V  VR  L      +    ++    L    G    DN+T ++V F
Sbjct:  187 GTTALTALICGRLLMVANAGDCRAVLCRKGRAIDMSEDHKPINLLERRRVEESGGFITNDGYLNEVLAVTRALGDWDLKLPH---GSQSPLISEPEIKQITLTEDDEFLVIGCDGIWDVLTSQEAVSIVRRGLNRHNDPTRCARELVMEAL----GRNSFDNLTAVVVCF 349          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 64/171 (37.43%), Postives = 101/171 (59.06%), Query Frame = 2
Query:  149 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQF 661
            +SG+TA  A++  +QL+VANAGD R VL R+G A+ +S+DH+ +   E +R+  +GG+I+ G +NG L++ RA+GD + K+     +    + A P+     L +DDEFL++ CDGIWD ++SQ  V  VR  L          E+     +  +   E  DN+T+I+V F
Sbjct:  183 SSGTTALTALVFGRQLLVANAGDCRAVLCRRGVAMEMSRDHRANYAEECERVAASGGYIEDGYLNGVLSVTRALGDWDMKMPDGSISP---LIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVRRGLRQHDD----PERCARELVMEAKRLETADNLTVIVVCF 346          
The following BLAST results are available for this feature:
BLAST of FC931677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
P2C27_ARATH6.648e-2940.94Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C22_ARATH8.683e-2942.35Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
PPMBL_MOUSE1.134e-2837.57Probable protein phosphatase 1B-like OS=Mus muscul... [more]
P2C02_ORYSJ3.300e-2846.27Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
P2C54_ORYSJ4.309e-2838.73Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
PP2C4_YEAST2.793e-2739.41Protein phosphatase 2C homolog 4 OS=Saccharomyces ... [more]
P2C19_ORYSJ6.223e-2743.53Probable protein phosphatase 2C 19 OS=Oryza sativa... [more]
PPMBL_HUMAN1.386e-2638.60Probable protein phosphatase 1B-like OS=Homo sapie... [more]
P2C49_ARATH3.088e-2641.76Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
P2C47_ORYSJ2.002e-2537.43Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC34107G08EF PostHarvP1 Citrus clementina cDNA clone C34107G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931677 ID=FC931677; Name=FC931677; organism=Citrus clementina; type=EST; length=689bp
GAGAGAATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGA
TTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTT
GACGATTGGGCATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAAC
TTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGG
TTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCA
CTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAG
AATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTT
TAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGT
TTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTAT
TGAACTTTGTGATGATGATGAGTTTCTTGTCATAGCTTGTGATGGGATTT
GGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAATTA
ACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGGTG
CTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGATCT
TGGTTCAGTTTAAAATCTTTCTAATATGGTCCTTCTGCG
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