FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_BREBN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxr PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32
Identity = 71/135 (52.59%), Postives = 99/135 (73.33%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I++LGSTGS+GT TL++V +H + F VVA+AAG+NI LL  QV+ FKP++V+V NE    E+++ LA  + +PEI+ G +G+   ARH  A  V+T +VG  G+ PT+AAIEAGK I LANKETL++ GP V+
Sbjct:    2 KKIALLGSTGSVGTSTLEVVGQHPEDFSVVAMAAGTNIDLLTLQVETFKPELVSVGNEKAAVELRDRLAG-KSQPEIVYGAEGLELVARHEAANFVMTAVVGSVGVAPTLAAIEAGKTIGLANKETLVSAGPVVM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PROMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus GN=dxr PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.214e-31
Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            +LGSTGSIGTQTL+I  E  ++F+VVAL AG N+ LL  Q++  +P+VVA+  + +L E++E L ++  K      P ++AG  G+  AA    A  VVTGIVGCAGL PT+AAI+AGKDIALANKETLIA GP V+
Sbjct:    1 MLGSTGSIGTQTLEIAKECPEQFKVVALTAGRNLDLLIKQIQEHQPEVVALARKDILPELQERLNSLTGKERPNALPHLVAGNDGLNIAASWHSADLVVTGIVGCAGLLPTLAAIKAGKDIALANKETLIAAGPVVI 137          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_GEOSL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sulfurreducens GN=dxr PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.214e-31
Identity = 72/135 (53.33%), Postives = 95/135 (70.37%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I++LGSTGSIG  TL++V+ H D+FRVVAL AG+N+ +L  Q++ F+PQ+V+V +E L  E+  +L     KPEI  G +G+I AA   DA  VV  IVG AGL PT AAI AGKD+ALANKETL+  G  ++
Sbjct:    2 KNITILGSTGSIGVSTLEVVSAHPDRFRVVALTAGNNLEMLRQQIETFRPQMVSVLSEKLAVELDRSLPGY--KPEIHYGVEGLIAAATAGDAHMVVAAIVGAAGLVPTAAAIRAGKDVALANKETLVTAGRLIM 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CHLT3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=dxr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.612e-31
Identity = 67/134 (50.00%), Postives = 96/134 (71.64%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K I++LGSTGSIGT +L++++   ++F    L+AGSN+ LLA+Q KRF+P+ V + NESL  E++  LA   E  EI++GE+G+ E +R  D   V+  +VG AGLKPTV A++AGKD+ LANKETL+ GG  +
Sbjct:    2 KRITILGSTGSIGTNSLEVISRFPEQFCATYLSAGSNVKLLAEQAKRFRPKGVVIMNESLEGELRSLLAG--ESIEIMSGEEGLCEISRRSDTDFVIGSVVGFAGLKPTVEALKAGKDVGLANKETLVVGGEII 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SYMTH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Symbiobacterium thermophilum GN=dxr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.027e-30
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV--EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K I++LGSTGSIGTQ LD++  H  +FRVVALAAG  +  LA+Q  RF+P +++V +      ++  L     + +PEI  G +G+I AA HP++  V+T +VG  G++PT+AAIEAGKDIALANKETL+A G  V
Sbjct:    3 KGIAILGSTGSIGTQALDVIDHHPGRFRVVALAAGRQVERLAEQALRFRPALLSVADADAAAALRALLLAEAGDYRPEIAWGREGLIRAATHPESGLVLTSVVGAMGVEPTLAAIEAGKDIALANKETLVAAGELV 138          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_GEOSF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sp. (strain FRC-32) GN=dxr PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.027e-30
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K +++LGSTGSIG  TL+IVA H +KF+++AL AG NI LL +Q+  F PQ+VAV+NE L  +++  L+    K  ++ G +G+I AA   D   VV  IVG AGL PT AAIEAGKDIALANKETL+  G  ++
Sbjct:    2 KNLTILGSTGSIGVSTLEIVAAHPEKFKIIALTAGENIDLLKEQIDAFAPQLVAVKNEELALKLEGMLSC--RKTAVMYGVEGMIAAATASDTNMVVAAIVGAAGLLPTSAAIEAGKDIALANKETLVTAGRLIM 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CHLPB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=dxr PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.342e-30
Identity = 70/134 (52.24%), Postives = 93/134 (69.40%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K +S+LGSTGSIG  TLD+V +H +KF V  LA G +I LLA+Q+K F+P +V+VR+++    ++E L +  EKPEIL G +G         +  VV+ IVG AGL PTV+AI+AGKDIALANKETL+  G  V
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPEKFNVTGLAEGHDINLLAEQIKEFRPDIVSVRDKASAGLLREQLGS--EKPEILWGIEGAAAVGAAEGSEMVVSAIVGAAGLVPTVSAIKAGKDIALANKETLVVAGQLV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_GEOMG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxr PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.989e-30
Identity = 71/135 (52.59%), Postives = 95/135 (70.37%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K +++LGSTGSIGT TL+IVA H D+F+V+AL AGSN+ LL  QV+ F+P++V+V    L  ++   L+  + KPEI  G  G+I AA   +A  VV  IVG AGL PT AAI+AGKD+ALANKETL+  G  ++
Sbjct:    2 KKLTILGSTGSIGTSTLEIVAAHPDRFQVIALTAGSNLELLKQQVEVFRPRLVSVLTADLARQLDRMLS--DPKPEIHHGIPGLIAAATAGEADVVVAAIVGAAGLVPTAAAIKAGKDVALANKETLVTAGRIMM 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PROA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dxr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 67/134 (50.00%), Postives = 92/134 (68.66%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K +S+LGSTGSIG  TLD+V +H D+F +  LA G ++TLLA+Q++ FKP +V+VR+E+  ++++E +   E  PEI  G +G         +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPDRFTITGLAEGHDVTLLAEQIREFKPSIVSVRDEASANQLRELIG--ESGPEIRWGIEGAAVVGEADGSDMVVSAIVGAAGLVPTVRAIKAGKDIALANKETLVVAGQLV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_EUBE2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dxr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.099e-30
Identity = 69/135 (51.11%), Postives = 98/135 (72.59%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K +S+LGSTGSIGTQTLD++  + D   VVALAAG+ ++ LA+QV+ FKPQ+V +  E L+ E+K  + +++ K  I++G++G+IEAA    A  VVT +VG  G+ PTV AI+A KDIALANKETL+  G  ++
Sbjct:    2 KNVSILGSTGSIGTQTLDVIRRNAD-INVVALAAGTRVSDLAEQVREFKPQLVCIGKEELVPELKTLIGDMDVK--IVSGDEGLIEAATIESAEIVVTAVVGMMGITPTVEAIKAHKDIALANKETLVCAGHIIM 133          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_BREBN5.447e-3252.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMA1.214e-3154.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSL1.214e-3153.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLT34.612e-3150.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYMTH1.027e-3050.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSF1.027e-3052.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLPB1.342e-3052.241-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOMG2.989e-3052.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROA25.099e-3050.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBE25.099e-3051.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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