FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ACIF2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=dxr PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.289e-19
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE-EKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            I +LG+TGSIG  TLD+V+ H D+FR+VAL     +  +    ++  P++V +       +++  L +   +K ++ +G + + EAAR      V+  IVG AGL PT+AA+EAGK + LANKE L+  G
Sbjct:    7 ICILGATGSIGKSTLDVVSRHPDQFRIVALTGNHRVAEMQLLCQQHHPELVVMAAPEAAQQLRVGLGDAGLKKIQVESGPEALAEAARMSGVDEVMAAIVGAAGLLPTLAAVEAGKKVYLANKECLVMAG 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_LEPIC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dxr PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 48/132 (36.36%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            + +LG++GS+G  TL ++  + +KFR+ + +  SN+    +  K F P  + V ++     +   L N   + +IL GE  + E  R P+   V+T IVG  GL+PT+AAI AGK + +ANKETL+  GP +
Sbjct:    5 VCLLGASGSVGESTLKVLRAYPEKFRLHSFSVHSNLEKAKEIQKEFSPDFICVSSDFADVGV---LGNKLGRTQILYGESSLCELVREPEVEIVITAIVGSVGLRPTIAAITAGKRLGIANKETLVTSGPLI 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CLOTE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium tetani GN=dxr PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 48/134 (35.82%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K I +LG+TGSIGTQTL+++ E ++  ++ A +A  +   +   ++ F+P+ V++ ++    ++KE      +  E+L G +G+   A       V+T +VG  GL+PT+ AI   KDIALANKETL+  G  +
Sbjct:    2 KNICILGATGSIGTQTLEVIREEKENLKLYAASANKSSEKIISIIEEFEPKYVSMTDKEAFLKVKEFCMKNNKNTEVLYGIEGMNTIASLDKVDIVLTSVVGMIGLEPTLKAIRNKKDIALANKETLVVAGEII 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_VIBPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Vibrio parahaemolyticus GN=dxr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 45/129 (34.88%), Postives = 79/129 (61.24%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +++LG+TGSIG  TL +V ++ + F VVALAAG+N+  +    ++++P+   + +++    ++  +  +    E+L G   +   A   +  +V+  IVG AGL PT+AA++AGK + LANKE L+  G
Sbjct:    4 LTILGATGSIGASTLKVVEQNPELFSVVALAAGTNVEKMVALCRQWQPKFAVMADKAAAVALQSEIHTISPNTEVLGGVDALCHVASLEEVDSVMAAIVGAAGLLPTMAAVKAGKRVLLANKEALVMSG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_VIBHB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 45/129 (34.88%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +++LG+TGSIG  TL +V ++ + F +VALAA +N+  +    ++++P+   + +++    ++  LA+V    E+L G   +   +   +  +V+  IVG AGL PT+AA++AGK + LANKE L+  G
Sbjct:    4 LTILGATGSIGASTLKVVEQNPELFSIVALAASTNVEKMVALCRKWQPKYAVMADKAAALALQSELASVSPSTEVLGGVDALCHVSALEEVDSVMAAIVGAAGLLPTMAAVKAGKRVLLANKEALVMSG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_JANSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Jannaschia sp. (strain CCS1) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  322 PKP----ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            P+P    +S+ G+TGSIG  T+D++A   + + VVAL    NI  LA   +R    +     E LL +++ AL       E  AGE  ++EAA  P A  +++ IVG AGL P   A+  G  +ALANKE+L+  GP +L
Sbjct:    3 PRPEKRRVSIFGATGSIGQNTIDLIARAPEAYDVVALTGARNIAQLAADARRLSASIAVTAEEELLPDLRAALEG--SGVEAAAGEAALLEAADRP-ADWIMSAIVGAAGLAPGFRALRHGTTLALANKESLVTAGPLLL 139          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HAHCH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Hahella chejuensis (strain KCTC 2396) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            ++VLG+TGSIG  TLD++A H D++ + A  A SN+  L     + +P+   +  ++ L   K+ L +     E+  G + + EA+   D   VV  IVG AGL PT+AA+ +GK I LANKE L+  G
Sbjct:    4 VTVLGATGSIGRSTLDVMARHPDRYELYAATAHSNLNELFSICIKHRPRYAILATDAGLAGFKKRLRDAGVSTEVRVGVEAMCEASSASDVDVVVAAIVGAAGLVPTLAAVNSGKRILLANKEALVMTG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ELUMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Elusimicrobium minutum (strain Pei191) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 56/136 (41.18%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL-AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I VLGSTGSIG  +LD++ +    + V+AL+A +N  LL  Q+ +FKP+ VAV NE    ++K     V E  ++L   E  +I  A  P A  ++ G+VG  G  P V AI+ GK IALANKE ++  G  ++
Sbjct:    2 KNIVVLGSTGSIGVSSLDVIDKLGAGYGVLALSANTNADLLIKQMLKFKPRFVAVLNEDSYQKVK---PYVPENTKLLPPDEDSLIFLASLPSADLIINGLVGAVGFMPLVTAIKNGKTIALANKEPIVMAGKSIM 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ARTCA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 61/142 (42.96%), Postives = 79/142 (55.63%), Query Frame = 1
Query:  322 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNES------LLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            P+ I++LGSTGSIGTQ +D+V      F VVAL+AG  N+ LLA Q        V +          L+DE   A      +PEI+AG       A   DA  V+ GI G  GL PT+AA+++G  +ALANKE+LI GG  V
Sbjct:    3 PRRIAILGSTGSIGTQAIDVVDGAPHLFEVVALSAGGGNLALLARQAVHTGAAAVGIAAGDPRELAVLIDEAAAAAGRSGYRPEIIAGPDASTRIAGL-DADVVLNGITGSIGLAPTLAALKSGATLALANKESLIVGGSLV 143          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_AERS4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Aeromonas salmonicida (strain A449) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            +LG++GSIG  TL ++  +  +++V+AL A  ++  +      F P+   + +E+    +   L        +L+G+  + E A HPDA +V+  IVG AGL PT+AA+ AGK I LANKE L+  G F +
Sbjct:    6 ILGASGSIGQSTLKVLRRNPGRWQVLALTAARSVDAMVRDCLEFSPRFAVMVDEAAATALAGQLKTHGSATRVLSGQAALCEVAAHPDAHSVMAAIVGAAGLAPTMAAVRAGKRILLANKEALVMSGAFFM 136          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_ACIF25.289e-1938.461-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LEPIC6.907e-1936.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOTE9.021e-1935.821-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_VIBPA1.178e-1834.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_VIBHB1.178e-1834.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_JANSC1.178e-1838.571-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HAHCH1.178e-1838.761-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ELUMP1.178e-1841.181-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ARTCA1.178e-1842.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AERS41.178e-1835.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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