FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CUPTR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            I++LG+TGSIG  TLD++  H  ++   AL+A   +  LADQ   F+P    V       E++  L +     E+  GE  +   A       V+  IVG AGL+PT+AA  AGK + LANKE L+  G
Sbjct:    4 ITILGATGSIGESTLDVIRRHPGRYAAHALSAHRQVRKLADQCIEFRPARAVVGTAEAARELETLLRDASVATEVSYGEAALESIAADAQTDAVMAAIVGAAGLRPTLAAARAGKRVLLANKEALVMSG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CHLMU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlamydia muridarum GN=dxr PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K ++++GSTGSIG Q L ++ E  D F +  LAA G N   L  Q++ F P+VVAVR+E+   E+++   ++E    IL+GE+G+I  A        +    G   L   +A+I+  K IALANKE+L+A G  V
Sbjct:    2 KRLALIGSTGSIGKQVLQVIREIPDAFVIETLAAYGRNRESLISQIREFSPRVVAVRDETTYKELRKLFPHIE----ILSGEEGLIAVATAASVDMTIVASSGIDALPAVMASIQERKTIALANKESLVAAGELV 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RUTMC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=dxr PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 48/131 (36.64%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            K I++LG+TGSIG  TL +V  H DKF +  L+A +N  L+ +   +++P    + +ES  +++   +       +IL+G Q + +   H D   V+  IVG AG+   + A++AGK I LANKE+LI  G
Sbjct:    2 KNITLLGATGSIGKSTLSVVDLHSDKFNIFTLSANTNWQLMLELCNKYQPNYAIMVDESSAEKLSTIITT---DTQILSGTQALDKVVAHQDTDFVMAAIVGTAGMSSALCAVKAGKRIMLANKESLILAG 129          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHOSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + +S+ G+TGSIG  T D+V      + FR VAL  G NI  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHOS5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + +S+ G+TGSIG  T D+V      + FR VAL  G N+  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNVARLAEMARALKAELAVTAHEECLPALREALAG--SGTEVAGGTQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHOS4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + +S+ G+TGSIG  T D+V      + FR VAL  G NI  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHOS1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + +S+ G+TGSIG  T D+V      + FR VAL  G NI  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_AGRRK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxr PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 56/131 (42.75%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +++LGSTGSIG  TLD++A+    D F + A+    NI LLA Q K     +    NE     +K+ALA         AG   +IEAA  P    V+  IVG AGL PT+ A   G DIALANKE L++ G
Sbjct:   11 LTILGSTGSIGQNTLDVIAQLGGRDAFEIAAITGHDNIDLLASQAKACGAALAVTANEDRYQALKDALAGTGIAAA--AGRNALIEAASIPSD-WVMAAIVGTAGLAPTLEAARRGADIALANKECLVSAG 138          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHIE6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium etli (strain CIAT 652) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  322 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            P+ +S+ GSTGSIG  TL++V EH    D F +  L    N+ LLA Q K    ++    ++   D +K AL+       + +G+ G++EAA   +A  V+  IVG AGL PT+AA   G DIALANKE L++ G   L
Sbjct:    8 PRRLSIFGSTGSIGRNTLNVV-EHLGGRDNFEISVLTGNGNVELLARQAKASGARLAVTASDRHYDSLKSALSG--SGIAVASGKSGLMEAA-DCEADWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFL 142          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PARDP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Paracoccus denitrificans (strain Pd 1222) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 54/137 (39.42%), Postives = 77/137 (56.20%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIV--AEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + ISVLG+TGS+G    D++  A   ++FR VAL  G+N+  LA   +  + ++        L +++ ALA      E  AG Q V EAA  P A   ++ IVG AGL P +  +  G  +ALANKETL+A GP V+
Sbjct:    2 RSISVLGATGSVGESAFDLLMGAGGPERFRTVALTGGANVARLAQMARALRAELAVTAWPERLADLRAALAG--SGIEAAAGPQAVAEAAARP-ADWTLSAIVGAAGLPPGLEVLNRGGTLALANKETLVAAGPLVM 135          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_CUPTR7.637e-1837.981-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLMU7.637e-1839.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RUTMC1.303e-1736.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOSK1.303e-1737.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOS51.303e-1737.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOS41.303e-1737.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOS11.303e-1737.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AGRRK1.701e-1742.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHIE62.902e-1740.291-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PARDP3.790e-1739.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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