FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHIL3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxr PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  322 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            P+ +S+ GSTGSIG  TL++V +H    + F +  L    N+ LLA Q K    ++    N+   + +K  L+       + +G+ G++EAA   D   V+  IVG AGL PT+AA   G DIALANKE L++ G
Sbjct:    8 PRRLSIFGSTGSIGQNTLNVV-DHLGGRENFEISVLTGSGNVELLARQAKSSGARLAVTANDRHYESLKSELSGTGIA--VASGKSGLMEAADR-DVDWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAG 138          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RALME (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dxr PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            I++LG+TGSIG  TLD+V  H D++ V AL+A   +  LA     F+P    V +     E++  L       E+  GE  +   A       V+  IVG AGL+ ++AA  AGK + LANKE+L+  G
Sbjct:    4 ITILGATGSIGESTLDVVRRHPDRYSVHALSAHRQVDKLAAACVEFRPARAVVGSAEAARELEAKLRAAGVPTEVSYGETALESIAEDAGTDAVMAAIVGAAGLRSSLAAARAGKRVLLANKESLVMSG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PSYIN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Psychromonas ingrahamii (strain 37) GN=dxr PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            K +++LG+TGSIG  TL +   + + +++  LAA S++  +    + F P  V++ +E    +++  L        +L  EQ ++E        +V+  IVG AGLK T+AA++AGK++ LANKE L+  G
Sbjct:    2 KKLAILGATGSIGDSTLSVCRSNPELYQITLLAASSSVDKMLALCREFTPLYVSMSSEISAKKLRGLLKRNNLSCHVLDDEQRLLELLASDHVDSVMAAIVGAAGLKTTLAAVDAGKEVFLANKEALVMSG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_EHRCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia chaffeensis (strain Arkansas) GN=dxr PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVL 729
            K +S+ GSTG+IG   +DI+    DK++V  L A SN+ LLA Q K    + V + N  L  E+K+ L     K  + AG+ G++  A   D    +  IVG A L P    I +G K IALANKE+++ GG  +L
Sbjct:    2 KTVSIFGSTGAIGQMIIDIIFADLDKYQVKVLVAKSNVQLLAFQAKLINAERVVIANVDLYQELKDLLVGTNIK--VSAGDSGMV-MATSLDVDYAMMAIVGMAALIPMTYLINSGIKVIALANKESIVCGGTLLL 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_XANCP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L       +  AG+Q +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVLHRPAHAVIADAALYPALRDGLRAAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAG 137          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_XANC8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L       +  AG+Q +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVLHRPAHAVIADAALYPALRDGLRAAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAG 137          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SHEAM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LG+TGSIG  TLD++  + +++R  AL A +++  + D     +P+   + +ES    + +AL       E+ +G++ ++      +  TV+  IVG AGL PT+AA+ AGK + LANKE L+  G
Sbjct:    6 ILGATGSIGKSTLDVIKRNPERYRAFALVAATSVERMRDLCIEHRPRYAHMVDESAAKRLADALPT-GLGIEVSSGDEALLGLVTAAEVDTVMAAIVGAAGLLPTLAAVRAGKRVLLANKEALVMSG 131          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHIEC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 51/135 (37.78%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  322 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            P+ +S+ GSTGSIG  TL+++ EH    + F +  L    N+ LLA Q +    ++    ++   + +K  L+       + +G+ G++EAA   DA  V+  IVG AGL PT+AA   G DIALANKE L++ G
Sbjct:    8 PRRLSIFGSTGSIGRNTLNVI-EHLGGRENFEISVLTGNGNVELLARQARSSGARLAVTASDRHYESLKRELSG--SGIAVASGKSGLMEAADR-DADWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAG 138          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_MYCLE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium leprae GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI--TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + VLGSTGSIGTQ L+++A + D+F VV LAAG     TLL  +          V N ++ D+    LA   + P    G   V       +A  V+  +VG  GL+PT+AA+  G  +ALANKE+L+AGG  VL
Sbjct:   15 VLVLGSTGSIGTQALEVIAANPDRFEVVGLAAGGAQLDTLLRQRA------ATGVTNIAIADDRAAQLAG--DIP--YHGTDAVTRLVEETEADVVLNALVGALGLRPTLAALHTGARLALANKESLVAGGSLVL 139          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_MYCLB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium leprae (strain Br4923) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 55/135 (40.74%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI--TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + VLGSTGSIGTQ L+++A + D+F VV LAAG     TLL  +          V N ++ D+    LA   + P    G   V       +A  V+  +VG  GL+PT+AA+  G  +ALANKE+L+AGG  VL
Sbjct:   15 VLVLGSTGSIGTQALEVIAANPDRFEVVGLAAGGAQLDTLLRQRA------ATGVTNIAIADDRAAQLAG--DIP--YHGTDAVTRLVEETEADVVLNALVGALGLRPTLAALHTGARLALANKESLVAGGSLVL 139          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_RHIL35.473e-1638.521-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RALME5.473e-1637.211-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSYIN5.473e-1633.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRCR7.148e-1638.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANCP9.335e-1635.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANC89.335e-1635.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEAM9.335e-1634.651-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHIEC9.335e-1637.781-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCLE9.335e-1640.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCLB9.335e-1640.741-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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