FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_XANOP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAG 137          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PSYA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            I+VLG+TGSIG  TL I+A     + V AL+    +  L    ++F P+ V V   ++ D+  + L+      E++ G+ G+++ A      TVV  IVG AGL  T+AA  AGK I LANKE L+  G  ++
Sbjct:    7 IAVLGATGSIGDSTLAILAAQPQYYDVYALSGYHRLDKLLALCQQFAPKRVGVPTTAV-DDFAKRLSAAGLDIEVVGGDAGLVDIATDSQTDTVVAAIVGAAGLPSTLAAARAGKRILLANKEALVMAGQVMI 138          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_EHRRW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia ruminantium (strain Welgevonden) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 52/132 (39.39%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGG 717
            K +S+ GSTG+IG   +D++    D ++V AL A SN+ LLA Q K    ++V + +  L  E+K+ L     K  I  G+ G ++ A   +   V+  IVG A L P V  I AG K IALANKE+++ GG
Sbjct:    2 KTVSIFGSTGAIGQMIIDVILASSDSYQVKALVAKSNVQLLAFQAKIVNAEMVVIADVGLYKELKDLLFGTNVK--ISVGDVG-MQMAASLNVDYVMMAIVGIAALVPMVYLISAGVKVIALANKESVVCGG 130          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_EHRRG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia ruminantium (strain Gardel) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 52/132 (39.39%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGG 717
            K +S+ GSTG+IG   +D++    D ++V AL A SN+ LLA Q K    ++V + +  L  E+K+ L     K  I  G+ G ++ A   +   V+  IVG A L P V  I AG K IALANKE+++ GG
Sbjct:    2 KTVSIFGSTGAIGQMIIDVILASSDSYQVKALVAKSNVQLLAFQAKVVNAEMVVIADVGLYKELKDLLFGTNVK--ISVGDVG-MQMAASLNVDYVMMAIVGIAALVPMVYLISAGVKVIALANKESVVCGG 130          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_EHRCJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia canis (strain Jake) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 54/136 (39.71%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVL 729
            K +SV GSTG+IG   +DI+    DK++V  L A SNI LLA Q K    + V + + +L  E+K+ L +   K  + AG+ G+I  A   D    +  IVG A L P    I +  K IALANKE+++ GG  +L
Sbjct:    2 KTVSVFGSTGAIGQMIIDIIFSELDKYQVKVLVAKSNIQLLAFQAKLVNAERVVITDVNLYRELKDLLLDTNIK--VSAGDDGMI-MATSLDVDYAMMAIVGIAALVPMTYLINSNVKVIALANKESIVCGGALLL 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_XANC5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASLLSAGSKVDELLALCATHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALASGDVCDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAG 137          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_THET8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 55/134 (41.04%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K + VLGSTGSIG Q L++       + VV LAAG N+  L+ Q+  +KP++VA   ESL  E+K     +       A E   +EA         V  I G AGL PT AA+  GK +ALANKE ++A GP +
Sbjct:    2 KRVVVLGSTGSIGQQALEVCRLRG--YEVVGLAAGKNLEALSRQIALWKPRLVAAE-ESLHKELKARFPGLRLAT---AEEVAALEAE------VAVAAIPGLAGLAPTRAAVRTGKRVALANKEAMVAAGPLL 123          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_THET2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 55/134 (41.04%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K + VLGSTGSIG Q L++       + VV LAAG N+  L+ Q+  +KP++VA   ESL  E+K     +       A E   +EA         V  I G AGL PT AA+  GK +ALANKE ++A GP +
Sbjct:    2 KRVVVLGSTGSIGQQALEVCRLRG--YEVVGLAAGKNLEALSRQIALWKPRLVAAE-ESLHKELKARFPGLRLAT---AEEVAALEAE------VAVAAIPGLAGLAPTRAAVRTGKRVALANKEAMVAAGPLL 123          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CAMJR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter jejuni (strain RM1221) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            + GSTGSIG   L + A       + ALA G NI LL +Q+ RFKP+ VA+++      +K           +  G++G+ +         ++  IVG AGLK T+ A E GK+IALANKE+L+  G F+
Sbjct:    3 LFGSTGSIGVNALKLAALKN--IPISALACGDNIALLNEQIARFKPKFVAIKDSKNKHLVKH--------DRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKELGKNIALANKESLVVAGSFL 122          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_XANOR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae GN=dxr PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAG 137          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_XANOP4.633e-1534.351-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSYA24.633e-1537.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRRW4.633e-1539.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRRG4.633e-1539.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRCJ4.633e-1539.711-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANC56.051e-1534.351-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THET86.051e-1541.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THET26.051e-1541.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMJR6.051e-1537.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOR7.903e-1534.351-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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