FC931678
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELHP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter hepaticus GN=dxr PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14 Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 1 Query: 337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717 +LGSTGSIGT L+ VA H D + +L AG NITLL Q+ + P+ V + +++ +A + ++ G +G++E + ++ +VG AGLKP+ A++ K +ALANKE+L+ G Sbjct: 3 LLGSTGSIGTNALE-VASHFD-IPIESLCAGKNITLLNQQIAHYAPKNVCIADKN------DAHKLINGNYKLFFGSEGILEMIESSHSHLLLNALVGFAGLKPSFKALQCNKKLALANKESLVNAG 121
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SULSY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=dxr PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13 Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1 Query: 331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717 + +LGSTGS+G+Q LD++ +++D+ +V L A L +Q+K FKP V V N E +D+IK +L GE G + A + D + I G G+ PT ++ K +A ANKE +I G Sbjct: 4 VGILGSTGSVGSQALDVIRKYKDQIKVELLGASKLSENLINQIKEFKPSYVYVENAEEKSIDDIK-----------VLVGEDG-LRRAVNLDLDLFINAIAGIKGILPTYLLLKYNKTLATANKEAIICLG 122
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_TROWT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Tropheryma whipplei (strain Twist) GN=dxr PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13 Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA---RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729 + ++GSTGSIGTQ +D + ++ D F VV LAA + +LL +Q QV+ +N + QG EAA +A V+ I G AGL T A ++ GK +ALANKE+LI GG + L Sbjct: 4 VIIVGSTGSIGTQAIDFILKNRDSFLVVGLAASTQTSLLREQA-----QVLGTKNTA----------------------QGASEAAELIEATEADVVLNAITGAAGLLSTYATLKTGKRLALANKESLIMGGKYFL 112
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori GN=dxr PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13 Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1 Query: 337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717 VLGSTGSIG L I + + AL+ G NI L+ +Q++ FKP+ VA+ + S L++++ A E+ G +G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G Sbjct: 3 VLGSTGSIGKNALKIAKKFG--IEIEALSCGKNIALINEQIQVFKPKKVAILDPSDLNDLEPLGA------EVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori J99 GN=dxr PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13 Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717 VLGSTGSIG L I + K + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++ A E+ G G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G Sbjct: 3 VLGSTGSIGKNALKIAKKFGVK--IEALSCGKNIALINEQIKVFKPKKVAILDPNDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVINAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CAMLR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dxr PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13 Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 1 Query: 337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPF 723 VLGSTGSIG TL I E + AL+ G NI LL +Q+ FKP+ V +++E D+ ++ + I + G+ + + VV IVG AGL ++ A + GK +ALANKE+L+ G F Sbjct: 3 VLGSTGSIGVNTLFIAKEKN--ISIEALSCGKNIKLLNEQIALFKPKFVCIQDEK--DK------HLVDHKNIFCAQDGLKKMISECKSKFVVNAIVGFAGLNSSLIAQKLGKTLALANKESLVVAGKF 121
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_TROW8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Tropheryma whipplei (strain TW08/27) GN=dxr PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13 Identity = 50/136 (36.76%), Postives = 69/136 (50.74%), Query Frame = 1 Query: 331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA---RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729 + ++GSTGSIGTQ +D + ++ D F VV LAA + +LL +Q QV +N + QG EAA +A V+ I G AGL T A ++ GK +ALANKE+LI GG + L Sbjct: 4 VIIVGSTGSIGTQAIDFILKNRDSFLVVGLAASTQTSLLREQA-----QVFGTKNTA----------------------QGASEAAELIEATEADVVLNAITGAAGLLSTYATLKTGKRLALANKESLIMGGKYFL 112
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHOBA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopirellula baltica GN=dxr PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13 Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 1 Query: 301 FRKTWDGPKPISVLGSTGSIGTQTLDIV-----AEHEDKFRVVALAAGSNITLLADQVK--RFKPQVVAVRNESLLDEIKEAL--------ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726 FR T ++VLG+TGSIG LD++ + + + V +++ S I L + P+ V V + + + +AL + + E+ + G ++ AA D VV IVG AGL+ T+AA+ AGK +ALANKETL+ GP V Sbjct: 14 FRSTNRPVSRVAVLGATGSIGVAALDVIENLNRCDPDFAWEVSSMSGHSQIDPLIELAGGCHTPPKCVVVSDAEMEAQAAKALRTASTQTSSRLTERCRLDVGPDALVRAATENDVDVVVAAIVGRAGLESTLAAVHAGKRVALANKETLVVAGPVV 170
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain HPAG1) GN=dxr PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13 Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717 VLGSTGSIG L I + + AL+ G NI L+ +Q+K FKP+ VA+ + S L+ ++ A E+ G G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G Sbjct: 3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPSDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SHELP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxr PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13 Identity = 39/127 (30.71%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717 +LG+TGSIG TL ++ ++ + ++ AL A ++ + D ++ P + + + E++ L + +GE + P+ V+ IVG AGL T+AA++AGK + LANKE+L+ G Sbjct: 6 ILGATGSIGASTLSVIEQNPEAYKAFALVAHKSVDKMLDLCIKYNPSIAHMVDPQAAAELQRRLP-AHMAIAVSSGEDELAAIVALPEVDCVMAAIVGAAGLPATLAAVKAGKRVLLANKESLVMSG 131 The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 429
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bpback to top |