FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELHP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter hepaticus GN=dxr PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 46/127 (36.22%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LGSTGSIGT  L+ VA H D   + +L AG NITLL  Q+  + P+ V + +++      +A   +    ++  G +G++E      +  ++  +VG AGLKP+  A++  K +ALANKE+L+  G
Sbjct:    3 LLGSTGSIGTNALE-VASHFD-IPIESLCAGKNITLLNQQIAHYAPKNVCIADKN------DAHKLINGNYKLFFGSEGILEMIESSHSHLLLNALVGFAGLKPSFKALQCNKKLALANKESLVNAG 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SULSY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=dxr PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            + +LGSTGS+G+Q LD++ +++D+ +V  L A      L +Q+K FKP  V V N  E  +D+IK           +L GE G +  A + D    +  I G  G+ PT   ++  K +A ANKE +I  G
Sbjct:    4 VGILGSTGSVGSQALDVIRKYKDQIKVELLGASKLSENLINQIKEFKPSYVYVENAEEKSIDDIK-----------VLVGEDG-LRRAVNLDLDLFINAIAGIKGILPTYLLLKYNKTLATANKEAIICLG 122          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_TROWT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Tropheryma whipplei (strain Twist) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA---RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + ++GSTGSIGTQ +D + ++ D F VV LAA +  +LL +Q      QV+  +N +                      QG  EAA      +A  V+  I G AGL  T A ++ GK +ALANKE+LI GG + L
Sbjct:    4 VIIVGSTGSIGTQAIDFILKNRDSFLVVGLAASTQTSLLREQA-----QVLGTKNTA----------------------QGASEAAELIEATEADVVLNAITGAAGLLSTYATLKTGKRLALANKESLIMGGKYFL 112          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori GN=dxr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q++ FKP+ VA+ + S L++++   A      E+  G +G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--IEIEALSCGKNIALINEQIQVFKPKKVAILDPSDLNDLEPLGA------EVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori J99 GN=dxr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            VLGSTGSIG   L I  +   K  + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++   A      E+  G  G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G
Sbjct:    3 VLGSTGSIGKNALKIAKKFGVK--IEALSCGKNIALINEQIKVFKPKKVAILDPNDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVINAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CAMLR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPF 723
            VLGSTGSIG  TL I  E      + AL+ G NI LL +Q+  FKP+ V +++E   D+      ++ +   I   + G+ +      +  VV  IVG AGL  ++ A + GK +ALANKE+L+  G F
Sbjct:    3 VLGSTGSIGVNTLFIAKEKN--ISIEALSCGKNIKLLNEQIALFKPKFVCIQDEK--DK------HLVDHKNIFCAQDGLKKMISECKSKFVVNAIVGFAGLNSSLIAQKLGKTLALANKESLVVAGKF 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_TROW8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Tropheryma whipplei (strain TW08/27) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 50/136 (36.76%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA---RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + ++GSTGSIGTQ +D + ++ D F VV LAA +  +LL +Q      QV   +N +                      QG  EAA      +A  V+  I G AGL  T A ++ GK +ALANKE+LI GG + L
Sbjct:    4 VIIVGSTGSIGTQAIDFILKNRDSFLVVGLAASTQTSLLREQA-----QVFGTKNTA----------------------QGASEAAELIEATEADVVLNAITGAAGLLSTYATLKTGKRLALANKESLIMGGKYFL 112          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_RHOBA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopirellula baltica GN=dxr PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 1
Query:  301 FRKTWDGPKPISVLGSTGSIGTQTLDIV-----AEHEDKFRVVALAAGSNITLLADQVK--RFKPQVVAVRNESLLDEIKEAL--------ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            FR T      ++VLG+TGSIG   LD++      + +  + V +++  S I  L +        P+ V V +  +  +  +AL        + + E+  +  G   ++ AA   D   VV  IVG AGL+ T+AA+ AGK +ALANKETL+  GP V
Sbjct:   14 FRSTNRPVSRVAVLGATGSIGVAALDVIENLNRCDPDFAWEVSSMSGHSQIDPLIELAGGCHTPPKCVVVSDAEMEAQAAKALRTASTQTSSRLTERCRLDVGPDALVRAATENDVDVVVAAIVGRAGLESTLAAVHAGKRVALANKETLVVAGPVV 170          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain HPAG1) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q+K FKP+ VA+ + S L+ ++   A      E+  G  G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPSDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SHELP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 39/127 (30.71%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LG+TGSIG  TL ++ ++ + ++  AL A  ++  + D   ++ P +  + +     E++  L        + +GE  +      P+   V+  IVG AGL  T+AA++AGK + LANKE+L+  G
Sbjct:    6 ILGATGSIGASTLSVIEQNPEAYKAFALVAHKSVDKMLDLCIKYNPSIAHMVDPQAAAELQRRLP-AHMAIAVSSGEDELAAIVALPEVDCVMAAIVGAAGLPATLAAVKAGKRVLLANKESLVMSG 131          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_HELHP3.922e-1436.221-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SULSY1.490e-1335.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_TROWT2.542e-1336.761-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPY2.542e-1336.221-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPJ3.320e-1337.011-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMLR3.320e-1337.981-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_TROW84.336e-1336.761-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOBA5.663e-1333.121-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPH5.663e-1337.011-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHELP7.397e-1330.711-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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