FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931678_ssr41 microsatellite FC931678_ssr41:41..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:87..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            VLGSTGSIG   L I  +   K  + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++   A V        G +G+        +  V+  IVG AGL+ +  +++  K +ALANKE+L++ G
Sbjct:    3 VLGSTGSIGKNALKIAKKF--KVGIEALSCGKNIALINEQIKVFKPKKVAILDSNDLNGLEPLGAKV------FVGLEGIDAMIEECVSNLVINAIVGVAGLRASFKSLQTNKKLALANKESLVSAG 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain P12) GN=dxr PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q+K FKP+ VA+ + + L++++   A V        G +G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPNDLNDLEPLGAKV------FVGLEGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HELPG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain G27) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q++ FKP+ VAV + + L+ ++   A      E+  G +G+        +  V+  IVG AGL+ +  +++  K +ALANKE+L++ G
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIQVFKPKKVAVLDPNDLNNLEPLGA------EVFVGLEGIDAMIEECASNLVLNAIVGVAGLRASFKSLQRNKKLALANKESLVSAG 121          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_AQUAE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Aquifex aeolicus GN=dxr PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            + VLGSTGS+G+QTL +     D+  +V + A      L  Q K++KP+ V     S  +  KE L ++ E  + L G++G+   A   ++  ++  I G  G+KP    I+AGK +  +NKE+++  G  +
Sbjct:    3 LGVLGSTGSVGSQTLQVYENFRDEIELVGILANRASEKLLQQAKKYKPKYVV----SYQEPAKEWLESLPEGVKYLKGDEGL--KAIIEESERLMNAISGIYGIKPAYEVIKAGKTLLASNKESILCLGEII 128          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SHEB9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS195) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G
Sbjct:    6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSG 131          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SHEB5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G
Sbjct:    6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSG 131          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SHEB2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS223) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G
Sbjct:    6 ILGATGSIGASTLSVISANPLAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSG 131          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SHEFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/127 (32.28%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LG+TGSIG  TL ++  +   F V  L A +++  +       +P+   + +E+   E+K  L N     ++  G + +          TV+  IVG AGL PT  A++AGK + LANKE L+  G
Sbjct:    6 ILGATGSIGASTLSVMVNNPADFHVYGLVANASVQKMLALCITHQPEYAHMVDENAAMELKSLLPN-HCVTQVTTGAEALNALVTDSRTDTVMAAIVGAAGLVPTFDAVKAGKRVLLANKEALVMSG 131          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CORJK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium jeikeium (strain K411) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 53/148 (35.81%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQG------------VIEAA--RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            + VLGSTGSIGTQ L+++A++ ++F +V ++A GS   +LA QV+ F            LD  + A+A+ E   E L GE G            ++EA      +   ++  +VG  GL  T+A +     +ALANKE+L+AGG  VL
Sbjct:   20 VVVLGSTGSIGTQALEVMADNPERFELVGISAHGSKPDVLAQQVRDFG-----------LDLGRVAVAS-EHTAEWLDGEFGAHCIRGKDSARELVEAVGPELGECDVILNALVGSLGLDATLATLGTKAKLALANKESLVAGGQLVL 155          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_HELPS7.397e-1336.221-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELP21.262e-1236.221-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPG2.811e-1235.431-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AQUAE6.262e-1231.821-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB98.178e-1230.711-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB58.178e-1230.711-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB21.068e-1130.711-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEFN1.395e-1132.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CORJK2.379e-1135.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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