FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931678_ssr41 microsatellite FC931678_ssr41:41..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:87..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PELLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon luteolum (strain DSM 273) GN=dxr PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            + +S+LGSTGSIG  TLD+V +H D+F++V LA G ++ +LA+Q++ F P +V+VR+    + +K  L    + PEI  G +G    A    +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHPDRFKIVGLAEGHDVNMLAEQIREFNPSIVSVRDAGSAELLKTLLGT--DLPEICHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTVKAIKAGKDIALANKETLVVAGQLV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_DESPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotalea psychrophila GN=dxr PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 67/135 (49.63%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LG+TGSIGT  L++V +  D++R+VA+AAG NI L A Q++ F P +V+V +E     ++E L     K  IL G  G  E A +P A   ++ IVG AGL PT+AAIEAGKDI LANKETL+  G  V+
Sbjct:    2 KKISLLGATGSIGTSVLEVVRKFSDQYRIVAMAAGRNIDLFARQIEEFSPDLVSVLDEEYAHCLQERLGGFRGK--ILWGNAGNEEVAAYPSASITISAIVGAAGLLPTLAAIEAGKDIGLANKETLVMAGKIVM 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR1_BACCZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ZK / E33L) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 62/134 (46.27%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++    ++    +I  G  G+I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKMFQPRIVSVATKDLADTLR---MHISANTKITYGTDGLIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR1_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D+++     +    +I  G  G I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIDLLEQQIKTFQPRIVSVATKDLADKLR---TRISANTKITHGTDGFIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PROMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Proteus mirabilis (strain HI4320) GN=dxr PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            K I++LGSTGSIGT TL ++  + D+F+V+AL AG N T +A Q + F+P+   + +E    E+K+ LAN   K EIL+G   V E A   +A  V++ I G AGLKPT+AAIE GK I LANKE+LI  G
Sbjct:    2 KQITILGSTGSIGTSTLSVIENNPDEFQVLALVAGKNATKMAQQCRAFQPKYAVMSDEKSAGELKQLLANTSCKTEILSGSDAVNEIAALDEADQVMSAITGVAGLKPTLAAIEKGKRILLANKESLITSG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_DESHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxr PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 63/135 (46.67%), Postives = 94/135 (69.63%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKPQ++ +  E    E+K+ +A+++   E+++G +G++         TVVT I G  GL+PT+ A++AGKDIALANKETL+AGG  V+
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPQIIGLMEEKAARELKQRVADLD--IEVVSGMEGLLRTVTDEVPDTVVTAISGRIGLEPTMEALKAGKDIALANKETLVAGGDLVM 134          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CHLPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dxr PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 63/134 (47.01%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            + +S+LGSTGSIG  TLD+V +H ++F +  LA G ++ +L  Q++ F P++V+VRN     E+   L N  EKPEI  G +G    A    A  VV+ IVG AGL PT++AI+AGK+IALANKET++  G  V
Sbjct:    2 RSLSILGSTGSIGLSTLDVVRQHPEQFTITGLAEGHDVGMLVKQIREFNPRLVSVRNADAAAELASLLGN--EKPEIFYGIEGAATVAAADGADMVVSAIVGAAGLVPTISAIKAGKNIALANKETMVVAGRLV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_SACD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxr PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 63/129 (48.84%), Postives = 86/129 (66.67%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            I VLGSTGSIG  TLD++A H DKF V AL A S+I LL +Q  +F PQ   +R+E+L   +K+ + ++    E+LAGEQ + + A      +V+  IVG AGL PT+AA+EAGK + LANKE+L+  G
Sbjct:    4 ICVLGSTGSIGISTLDVLASHPDKFSVYALTANSSIDLLVEQCLKFSPQYAVIRDEALYLPLKQRIESLNCTTEVLAGEQALCDVASAVQVDSVMAAIVGAAGLAPTLAAVEAGKRVLLANKESLVMSG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_THEPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=dxr PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 63/135 (46.67%), Postives = 92/135 (68.15%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQMGKDIALANKEVLVTAGQIVM 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_THEP3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=dxr PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 63/135 (46.67%), Postives = 92/135 (68.15%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQRGKDIALANKEVLVTAGQIVM 132          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_PELLD8.140e-2847.761-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESPS8.140e-2849.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCZ8.140e-2846.271-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR1_BACCR8.140e-2846.271-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_PROMH1.063e-2749.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESHD1.389e-2746.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLPD1.389e-2747.011-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SACD21.813e-2748.841-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEPX2.368e-2746.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEP32.368e-2746.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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