FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_GEOSW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacillus sp. (strain WCH70) GN=dxr PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 63/134 (47.01%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K IS+LG++GSIGTQTLDI+  H D+F++ A++ G N+ +    ++ F P++VAV      ++++   A    K +I+ GE+G+IEAA  P+   VVT +VG  GL PT+ AIEAGK IALANKETL+  G  V
Sbjct:    2 KYISILGASGSIGTQTLDIIRSHPDEFQLTAISIGKNVDMARAIIEEFAPRLVAVAEADAYEKLRSEYAG---KVKIVFGEEGLIEAAAFPETDIVVTAVVGSVGLVPTLRAIEAGKTIALANKETLVTAGHIV 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CHLCH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=dxr PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 65/134 (48.51%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            + +S+LGSTGSIG  TLD+V +H D+F +V LA G ++  LA Q++ FKP  V+VR+     +++E L     KPE+  G  G    A       VV+ IVG AGL+PTVAAI+AGK IALANKETL+  G  V
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHRDRFTIVGLAEGHDVAALAAQIEEFKPLAVSVRDAESAKKLQELLG--AHKPEVYYGLDGAATIAALDGVDMVVSAIVGAAGLRPTVAAIKAGKHIALANKETLVVAGELV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ALKOO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxr PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K IS+LGSTGSIGTQTLD+V  H +KF++VAL+A  NI  + +Q+  F P++VAV +    + +    A + +K ++++G +G+IE A    A  VVT +VG  GL PTV AI  GK IALANKETL+  G  +
Sbjct:    2 KNISILGSTGSIGTQTLDVVRNHPEKFKIVALSASGNIDAIENQIHEFHPEIVAVFHREKAEILS---ARIGKKVKVVSGIEGLIEVATLDSADIVVTSVVGSIGLIPTVEAIRCGKTIALANKETLVVAGELI 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR1_BACHK (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=dxr1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++     +    +I  G  G+I  A HP++  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR1_BACAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus anthracis GN=dxr1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.093e-27
Identity = 61/134 (45.52%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++     +    +I  G  G+I  A HP++  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_BACCQ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus cereus (strain Q1) GN=dxr PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LG++GSIGTQTLD++  H D+FR+VA +AG NI      ++ F PQ+V+V+ E   D +K  L  V    +++ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSAGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQAVSGNTKVVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVM 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR2_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LG++GSIGTQTLD++  H D+FR+VA + G NI      ++ F PQ+V+V+ E   D +K  L +V    +I+ G +G++E A HPDA  VV  +VG  GL PT+ AIEA K I +ANKETL+  G  V+
Sbjct:    2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE--DVLK--LQSVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIGIANKETLVTAGHLVM 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PHOLL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Photorhabdus luminescens subsp. laumondii GN=dxr PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.276e-27
Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K +++LGSTGS+G  TL +V  + DKF+V ALAAG NI ++A+Q   F+PQ  A+ +E    E+++ L     K E+  GEQ   + A   D   V++GIVG AGL PT+AAI AGK I LANKE+LI  G F +
Sbjct:    2 KRLTILGSTGSVGKSTLTVVRNNPDKFKVTALAAGKNIQVMAEQCLEFRPQYAAMADEVSAKELRQLLIEQGCKTEVFFGEQAACDLAALNDVDQVMSGIVGVAGLLPTLAAIRAGKQILLANKESLITSGRFFM 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ANASK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter sp. (strain K) GN=dxr PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.276e-27
Identity = 61/135 (45.19%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLM 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ANAD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=dxr PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.276e-27
Identity = 61/135 (45.19%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLM 133          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_GEOSW3.093e-2747.011-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLCH3.093e-2748.511-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ALKOO3.093e-2747.761-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACHK3.093e-2745.521-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR1_BACAN3.093e-2745.521-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_BACCQ4.040e-2747.411-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR2_BACCR4.040e-2747.411-deoxy-D-xylulose 5-phosphate reductoisomerase 2 ... [more]
DXR_PHOLL5.276e-2747.411-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASK5.276e-2745.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAD25.276e-2745.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
back to top