FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CLOPE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens GN=dxr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GKDIALANKETL+  G  V+
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTLDIIKEFSPKYVAINHEESYKKLVDLVKSEGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKDIALANKETLVVAGELVM 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CLOP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GKDIALANKETL+  G  V+
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSQGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKDIALANKETLVVAGELVM 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_LAWIP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dxr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  322 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            P+ IS+LGSTGSIGT  LD++  H++ F +VAL  G N+ LLA Q  ++KP  +AV++E+  + +   L  +  KP I  G+QG ++ A  P+  TV++  VG AGL  TVAA + GK I LANKETL+  G  +
Sbjct:   18 PRTISILGSTGSIGTNALDVIKSHKELFHIVALGGGKNVQLLAKQAIQWKPDYLAVQDETSKEALIPLLP-INYKPSIFVGQQGYVKLASLPEVTTVLSAQVGAAGLHGTVAAAKNGKVICLANKETLVLAGKLI 151          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_EUBR3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dxr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LGSTGSIGTQTLD++ EH D  +VVAL+ G N++L+  Q + FKPQ V+V +E+   +++ +LA+ +   E+  G  G+I  A       VVT IVG  G++PT+AAI+A K IALANKETL+  G  ++
Sbjct:    2 KKISILGSTGSIGTQTLDVIREHGD-MQVVALSCGRNLSLIEKQAREFKPQFVSVSDENDAKKLRTSLADTDI--EVGYGMDGLIRCATIEPCDIVVTAIVGMLGIRPTIAAIKAKKTIALANKETLVTAGHIII 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CLOD6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium difficile (strain 630) GN=dxr PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL-ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LGSTGSIG QTLD+V ++ DKF +VA++A SNI LL +Q+  FKP+ V V  E+   ++KE L  N+E   E+LAG +G+   +   +   ++T +VG  GL PT+ AI+ G DIALANKETL+  G  V+
Sbjct:    2 KKISILGSTGSIGKQTLDVVRDNRDKFEIVAISANSNIELLLEQIVEFKPKYVTVFEENKALKLKEMLPKNIE--IEVLAGMEGLKIISSLDEVDVLLTAVVGMIGLVPTLCAIKKGIDIALANKETLVTAGELVM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_GEOKA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacillus kaustophilus GN=dxr PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 65/135 (48.15%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LG++GSIGTQTLD++  H D+FR+ A + G NI      +  F P +VAV +    D  K        +  I+ GE+G+IEAA  P A  VVT +VG  GL PT+ AIEAGK IALANKETL+  G  V+
Sbjct:    2 KYISILGASGSIGTQTLDVIRAHPDEFRLAAASVGKNIEAARRLIAEFSPSLVAVADR---DAYKVLYREYRGRTTIVYGEEGLIEAAVCPQADVVVTAVVGSVGLVPTLKAIEAGKAIALANKETLVVAGHLVM 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HAEDU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Haemophilus ducreyi GN=dxr PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            K I +LG+TGSIG  TL ++  + D+++V AL  G N+ L+A Q  +FKP+  A+ +E     + E L  +    ++L GEQ + E A HPDA  V+  IVG AGL PT+AA++AGK I LANKE+L+  G
Sbjct:    2 KNIVILGATGSIGQSTLSVIEHNPDQYQVFALVGGKNVELMATQCSQFKPKFAALVDEKAAKLLAEQLKALNLTTQVLTGEQAICELAAHPDANIVMAAIVGAAGLLPTLAAVKAGKQILLANKESLVTCG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CLOPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain SM101 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GK+IALANKETL+  G  V+
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSEGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKNIALANKETLVVAGELVM 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_THETN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter tengcongensis GN=dxr PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 61/135 (45.19%), Postives = 94/135 (69.63%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K + +LGSTGSIG QTLD+V   +++F +V L   +N++LL+ Q+K F+P+VVAV++E    +++E   N++E  E+L G++G+ E  ++ +A  VV  + G AGL PTV AI+ GK+IALANKE L+  G  V+
Sbjct:    2 KKLIILGSTGSIGRQTLDVVRSLKEEFEIVGLTGYNNVSLLSKQIKEFRPKVVAVKDEEKARKLRE---NLDEPIEVLTGKEGLKEIVKY-EADMVVVAVEGIAGLIPTVEAIKLGKNIALANKEVLVTAGEIVM 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_BACSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus clausii (strain KSM-K16) GN=dxr PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 60/135 (44.44%), Postives = 93/135 (68.89%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LGSTGSIGTQTLD++ ++ D+F + ALA G+N+ L  +Q+K F+P++V+V+     ++ +       +  E L GE+G+ E AR+ ++  VVT I G  GL PT++AI+A K +A+ANKETL++ G  V+
Sbjct:    2 KQISLLGSTGSIGTQTLDVIRDYPDQFTLSALACGTNLELCRNQIKEFQPKLVSVQRP---EDAQTLAGEFGDSIEFLYGEEGLKEVARYSESDIVVTAITGSIGLLPTLSAIKAKKAVAIANKETLVSAGHLVV 133          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_CLOPE2.005e-2645.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOP12.005e-2645.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LAWIP3.420e-2645.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBR33.420e-2648.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOD63.420e-2648.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOKA5.834e-2648.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HAEDU7.619e-2645.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPS7.619e-2644.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THETN9.951e-2645.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACSK9.951e-2644.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
back to top