FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_MOOTA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=dxr PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP--EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I+VLGSTGSIG QTL++VA H  +FRV AL A  N  LLA QV+RF+P++  + +E    E    LA +   P   ILAGE+G++ AA       VV  +VG   LK  +AA+EAGKDIALANKE L+A G  V+
Sbjct:    3 KEITVLGSTGSIGRQTLEVVAAHPGRFRVAALVAARNDELLAAQVRRFRPRLAVLLDE----ERARVLAEMVSDPGIRILAGEEGLMAAACLEGVELVVAAMVGIRSLKAILAALEAGKDIALANKEVLVAAGQLVM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_DESRM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotomaculum reducens (strain MI-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 66/134 (49.25%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K IS+LGSTGSIG QTL++V    ++  VVALAAG N  L  +Q K +KP +V+++ E     +KE L   + +PEI  G  G++  A   +AV VVT + G  GL PT AAI+A K IALANKETL+A G +V
Sbjct:    3 KQISILGSTGSIGRQTLEVVNSFPEELNVVALAAGRNRELFLEQCKAYKPLLVSLQLEEDALWLKEHLIKEKLRPEIRYGLDGLVAVATCHEAVVVVTALSGAIGLVPTCAAIKASKKIALANKETLVAAGQYV 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_DESAP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulforudis audaxviator (strain MP104C) GN=dxr PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 65/135 (48.15%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  322 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            PK I+VLGSTGSIG Q LD+V  H +KF+VV LAAG N  LLA+Q   F P VV+V +    D+ +     +    E+ AGE G+   A  P A  ++  + G  GL PTV AI++GKD+ALANKETL+  G  V
Sbjct:    2 PKRIAVLGSTGSIGRQALDVVRSHPEKFKVVGLAAGRNWELLAEQAAEFAPGVVSVWSG---DDAERVRVRLGGGVEVHAGEPGLSAVATWPAADILLVAVAGTTGLVPTVEAIQSGKDVALANKETLVVAGELV 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_THERP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 62/132 (46.97%), Postives = 89/132 (67.42%), Query Frame = 1
Query:  331 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            +S+LGSTGSIG QTL++VA H D+FRVVALAA S I  L +QV+ F+P++VA+  ESL     +          +++G  G++EAA +  A  VV  + G +G++PT+AA  AGK IALANKE+++  GP +
Sbjct:    5 VSLLGSTGSIGRQTLEVVAAHPDRFRVVALAARSQIDALQEQVRIFRPELVAIAQESLGISFPDT--------RVVSGPGGLVEAATYETADIVVIALSGNSGIEPTLAAAAAGKTIALANKESVVCAGPLL 128          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_STRAW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Streptomyces avermitilis GN=dxr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVAL-AAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            +LGSTGSIGTQ +D+V  + D+FRV  L AAG  + LLA+Q  R +   VAV  E ++  ++EAL       E  PEILAG     + A   D  TV+ GI G  GL PT+AA+EAG+ +ALANKE+LI GGP V
Sbjct:    2 ILGSTGSIGTQAIDLVLRNPDRFRVTGLSAAGGRVGLLAEQAHRLRVSTVAVAREDVVPVLREALTAQYGPGEPLPEILAGADAATQLAAS-DCHTVLNGITGSIGLAPTLAALEAGRTLALANKESLIVGGPLV 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PORGI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis GN=dxr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 62/135 (45.93%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_PORG3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 62/135 (45.93%), Postives = 88/135 (65.19%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIM 135          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CLOPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.938e-25
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K ISVLGSTGSIGTQTL++V  ++D  +V ALAA SNITLL +Q++ F P++V V +     E+K+ ++++E   E  AG  G+I  A    A  VV+ +VG  G+KP + AI  GKDIA ANKETL+  G  ++
Sbjct:    2 KIISVLGSTGSIGTQTLEVVRNNKD-LKVSALAASSNITLLEEQIREFHPKLVCVYDREKALELKKRVSDLEVTVE--AGMDGLIACATEESADIVVSAVVGMIGIKPVMEAILRGKDIAFANKETLVTAGHLIM 133          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_HAEPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 54/127 (42.52%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  337 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 717
            +LGSTGSIG  TL +V  + ++++V AL  G N+ L+ +Q ++++P+ VA+ +E    ++KE L  +  K E+LAG++ + E A HP+   V+  IVG AGL PT++A++AGK + LANKE+L+  G
Sbjct:    6 ILGSTGSIGKSTLSVVDNNPEQYQVFALVGGKNVELITEQCQQYQPRFVALDDEQAAAKLKENLTALGLKIEVLAGQKAIYELASHPEVDMVMAAIVGAAGLLPTLSAVQAGKKVLLANKESLVTCG 132          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_BACV8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFV 726
            K I++LGSTGSIGTQ L ++ EH D + V AL A + + LL +Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+  +VG AGL+PT+ AI+AGK IALANKETL+  G  +
Sbjct:    3 KQIAILGSTGSIGTQALQVIEEHPDLYEVYALTANNRVDLLVEQARKFMPEAVVIANEEKYLQLKEALSDLPVK--VYAGADALSQIVESQPIDIVLASMVGYAGLRPTINAIKAGKAIALANKETLVVAGELI 134          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_MOOTA1.300e-2550.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESRM1.300e-2549.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESAP1.300e-2548.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THERP2.217e-2546.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_STRAW2.217e-2549.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PORGI2.217e-2545.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PORG32.217e-2545.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPH4.938e-2548.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HAEPS8.424e-2542.521-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACV88.424e-2543.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
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