FC931684

Overview
NameFC931684
Unique NameFC931684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: ALH13_CAEEL (Probable delta-1-pyrroline-5-carboxylate synthetase OS=Caenorhabditis elegans GN=alh-13 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.038e-38
Identity = 90/234 (38.46%), Postives = 134/234 (57.26%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL--DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GRL +++EQ+ EL   G ++++VSSGAV  GRQ+LR   +++ S+    +  + +  D +ACAA G   LM+LY+ LF Q  +T +Q+L+T  D  D+  RK L  T++SLL L +IPI N NDAV    AP    +    DNDS                 S+V G+Y+GPP    S+L++TY+ +++   +TFG  S+ G GGM +KV         G+  VIT+G A D+I
Sbjct:  102 GRLASIVEQVSELQQSGRQMLIVSSGAVAFGRQKLRQELVMSMSMRQTLRGPSGMTADKRACAASGMPGLMSLYEQLFQQYGITVAQVLLTKPDIDDDQRRKNLQATIESLLSLNIIPIVNANDAV----APDPKLNMHISDNDSLAARLSAEIEAELLIILSNVNGVYTGPPDLEGSRLLYTYVPSENSG-VTFGANSKFGTGGMESKVTACVNALNNGVTTVITNGLAQDAI 330          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_SALAI (Glutamate 5-kinase OS=Salinispora arenicola (strain CNS-205) GN=proB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 76/227 (33.48%), Postives = 111/227 (48.90%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFG--DKSRVGRGGMTAKVNXXXXXXXXGIPVVITS 676
            GR+ AL++ L  L +QG E++LVSSGA+  G           + L   ++P++    +A A+VGQ  L+  Y   F++  +T  Q+L+T  D       +  Y T++ LLDLR +PI NEND V+T +         F DND                  SDV+ L++G P+ P S  I     A+  + +  G   +S VG GGM  KV         GIPVV+TS
Sbjct:   30 GRVDALVDTLGGLAAQGREVVLVSSGAIAAGL----------APLGLTRRPRDLATQQAAASVGQGLLIGRYAAAFARHHLTVGQVLLTVDDMTRRAHYRNAYRTLRKLLDLRAVPIVNENDTVATEEIR-------FGDNDRLAALVAALVDTDLLVLLSDVDALWTGDPTRPGSTPIAEVHDARDLSGVAIGGAGRSGVGTGGMVTKVEAARIATGFGIPVVLTS 239          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_SYNJA (Glutamate 5-kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=proB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 84/232 (36.21%), Postives = 110/232 (47.41%), Query Frame = 2
Query:    8 LGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKH-QAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            LG L+E L  L SQG+ +ILVSSGAVG+G  RL  R          Q+P    + +A AAVGQ  L+ LYD LFS L+   +Q+L+T  DF +         T   LL + VIPI NEND V+  +         F DNDS                 +DV+ LYS  P  +P+++ I    R    Q +      S  G GGM  K+         G+ VVIT+G   D I
Sbjct:   30 LGPLVEVLTRLRSQGYAVILVSSGAVGIGCARLGLR----------QRPTAIAEKQAVAAVGQGRLIRLYDDLFSALNQPIAQVLLTRGDFVERSRYVNANRTFTQLLQMGVIPIVNENDTVAVEELK-------FGDNDSLSALVASMVQAKWLILLTDVDRLYSADPHRDPSAEPIERVWRGMPLQIKAEAHGNSGWGTGGMATKLAAAQIATAAGVTVVITNGKRPDQI 244          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROJ_BACSU (Glutamate 5-kinase 2 OS=Bacillus subtilis GN=proJ PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 77/220 (35.00%), Postives = 109/220 (49.55%), Query Frame = 2
Query:    5 RLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSG-PPSEPNSKLIHTYIRAKHQAEITFGDK-SRVGRGGMTAKVNXXXXXXXXGI 658
            +L AL++Q+ +L   G+E+ILVSSGAV  G     YRKL       +Q+P+   + +A A++GQ  LM  Y  LF      +SQ+L+T SDF DE     + +T+  LL+  +IPI NEND V+  +         F DND+                 SD++GLY G P + P +K I          E   GD  S VG GGM +K++        GI
Sbjct:   30 KLEALVDQVVKLKDAGYEVILVSSGAVAAG-----YRKL-----GFIQRPEKLPEKQASASIGQGLLMEAYSKLFLAHGYVASQILITRSDFSDEYRYNNVRNTMNVLLERGIIPIINENDTVTVNRLK-------FGDNDTLAAKVAGLIDADMLVILSDIDGLYDGNPRTNPEAKKIQRVSEITPDIEACAGDTGSIVGTGGMRSKLDAFKIVMASGI 232          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_SYNJB (Glutamate 5-kinase OS=Synechococcus sp. GN=proB PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 81/226 (35.84%), Postives = 109/226 (48.23%), Query Frame = 2
Query:    8 LGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPS-EPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSG 679
            LG L+E L  L  QG+ +ILVSSGAVGVG  RL +R          Q+P    + +A AAVGQ  L+ LYD LFS L+   +Q+L+T  D  +         T   LL + VIPI NEND V+  +         F DNDS                 +DV+ LYS  P+ +P+++ I   +     Q +     KS  G GGM  K+         G+ VVIT+G
Sbjct:   30 LGPLVEVLTHLRRQGYAVILVSSGAVGVGCARLGWR----------QRPTAIAEKQAVAAVGQGRLIRLYDDLFSALNQPIAQVLLTRGDLVERSRYVNANRTFAQLLQMGVIPIVNENDTVAVEELK-------FGDNDSLSALVASMVQAKWLILLTDVDKLYSADPNRDPSAQPIERVLPGIPLQVKAEAQGKSGWGTGGMATKLTAAQIATAAGVTVVITNG 238          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_NOSP7 (Glutamate 5-kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=proB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 81/226 (35.84%), Postives = 108/226 (47.79%), Query Frame = 2
Query:    8 LGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDK-SRVGRGGMTAKVNXXXXXXXXGIPVVITSG 679
            +  L E L  L SQG  +ILVSSGAVGVG  RL             ++P+     +A AAVGQ  L+ +YD LF+ L    +Q+L+T SD          Y+T Q LL L VIPI NEND V+  +         F DND+                 +DV+ LYS  P S P+++ I      K  AE+  G + S+ G GGM  K++        G+  VIT G
Sbjct:   27 IATLAETLCHLRSQGHRVILVSSGAVGVGCARLGLT----------ERPRAIALKQAVAAVGQGRLIRIYDDLFTTLQQAIAQVLLTRSDLVQRSRYLNAYNTFQELLGLGVIPIVNENDTVAIDELK-------FGDNDTLSALVASLIEADWLFLLTDVDRLYSADPRSVPDARPIALVSSIKELAELQIGSQGSQWGTGGMVTKISAARIAIAAGVRTVITQG 235          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_BIFAA (Glutamate 5-kinase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=proB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 75/226 (33.19%), Postives = 107/226 (47.35%), Query Frame = 2
Query:    5 RLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITF---GDKSRVGRGGMTAKVNXXXXXXXXGIPVVIT 673
            RL AL+  +  +   G  ++LVSSGA+  G   L + K          +P +  D +ACAAVGQ  LMA Y+  F++  +   Q+L+T SD       + +  T+  LLDL  +PI NEND++++ +         F DND                  +DV+ LY+ PPSEP SK I +Y+     A       G  S VG GGM  K+         GIP V+T
Sbjct:   39 RLNALVAAIARVRLMGGRVVLVSSGAIAAGFGTLGFDK----------RPTDVADQQACAAVGQGLLMAQYEAAFARYGLRVGQILITVSDTIAPQQYRNVRRTLDRLLDLGAVPIINENDSLASNEIR-------FGDNDRLSALIANIVVADALVLLTDVDALYTAPPSEPGSKRI-SYVPNVEDALAKVQVGGTGSNVGTGGMVTKMEAARVAAVSGIPAVLT 246          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_BACTN (Glutamate 5-kinase OS=Bacteroides thetaiotaomicron GN=proB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 74/225 (32.89%), Postives = 107/225 (47.56%), Query Frame = 2
Query:    5 RLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSG 679
            R+ AL++Q+ ELN  G EIIL+SSGAV  GR  +  +K ++S        Q +L     +AVGQ+ L+  Y  LF +  +   Q+L T  +F          + +  +L+  VIPI NEND +S        S  +F DND                  S+++G+Y+G PS+P S +I      K  +      KS  GRGGM  K N        GI V+I +G
Sbjct:   28 RMSALVDQIAELNKSGVEIILISSGAVASGRSEIHPQKKLDSV------DQRQL----FSAVGQAKLINRYYELFREHGIAVGQVLTTKENFSTRRHYLNQKNCMTVMLENGVIPIVNENDTISV-------SELMFTDNDELSGLIASMMDAQALIILSNIDGIYNGSPSDPASAVIREIEHGKDLSNYIQATKSSFGRGGMLTKTNIARKVADEGITVIIANG 235          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_PHOLL (Glutamate 5-kinase OS=Photorhabdus luminescens subsp. laumondii GN=proB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 73/229 (31.88%), Postives = 110/229 (48.03%), Query Frame = 2
Query:   17 LLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDK-SRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            L+ Q  + + +G  II+V+SGA+  GR+ L Y  L          P      +  AAVGQS L+ L++  FS   +   Q+L+T +D  D +      DT+Q+LLD R++P+ NENDAV+T +           DND+                 +D+EGLY+  P + P++KLI        +  +  GD  S +G GGM  K+         GI V+I +G   D I
Sbjct:   32 LVRQCAQQHEKGHRIIIVTSGAIAAGREHLGYPDL----------PATIASKQLLAAVGQSRLIQLWEQFFSIYGIHVGQMLLTRADLEDRERFLNARDTLQALLDNRIVPVINENDAVATAEIK-------VGDNDNLSALAAILGGADKLLLLTDIEGLYTADPRNNPDAKLIPEVYDISDELRMVAGDSISGLGTGGMATKLQAAGIAGRAGIDVIIAAGNKPDVI 243          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: PROB_CYAP4 (Glutamate 5-kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=proB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 75/226 (33.19%), Postives = 107/226 (47.35%), Query Frame = 2
Query:    8 LGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRV-GRGGMTAKVNXXXXXXXXGIPVVITSG 679
            +  L+E L +L  QG  I+LVSSGAVGVG  RL             ++P+     +A AAVGQ  LM +YD  F+ L+   +Q+L+T  D          Y+T Q L +L VIPI NEND V+  +         F DND+                 +DV+ LYS  P  +P+++ I      +  A++  GD+  + G GGM  K+         G+  VIT G
Sbjct:   27 IAVLVETLSKLRRQGQRIVLVSSGAVGVGCGRLGLS----------ERPRTMALKQAVAAVGQGRLMRIYDDFFTTLNQPIAQVLLTRGDLVQRQRYLNAYNTFQELFNLGVIPIVNENDTVAVDELK-------FGDNDTLSALVASLVEADWLFLLTDVDRLYSADPRQQPDAQPISVVNSIEELAQVQVGDRGSIWGTGGMATKITAAEIAGEAGVRTVITEG 235          
The following BLAST results are available for this feature:
BLAST of FC931684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 446
Match NameE-valueIdentityDescription
ALH13_CAEEL8.038e-3838.46Probable delta-1-pyrroline-5-carboxylate synthetas... [more]
PROB_SALAI6.606e-2433.48Glutamate 5-kinase OS=Salinispora arenicola (strai... [more]
PROB_SYNJA1.127e-2336.21Glutamate 5-kinase OS=Synechococcus sp. (strain JA... [more]
PROJ_BACSU1.922e-2335.00Glutamate 5-kinase 2 OS=Bacillus subtilis GN=proJ ... [more]
PROB_SYNJB3.279e-2335.84Glutamate 5-kinase OS=Synechococcus sp. GN=proB PE... [more]
PROB_NOSP73.279e-2335.84Glutamate 5-kinase OS=Nostoc punctiforme (strain A... [more]
PROB_BIFAA4.282e-2333.19Glutamate 5-kinase OS=Bifidobacterium adolescentis... [more]
PROB_BACTN4.282e-2332.89Glutamate 5-kinase OS=Bacteroides thetaiotaomicron... [more]
PROB_PHOLL7.304e-2331.88Glutamate 5-kinase OS=Photorhabdus luminescens sub... [more]
PROB_CYAP41.246e-2233.19Glutamate 5-kinase OS=Cyanothece sp. (strain PCC 7... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107H03EF PostHarvP1 Citrus clementina cDNA clone C34107H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931684 ID=FC931684; Name=FC931684; organism=Citrus clementina; type=EST; length=698bp
GGGAAGGCTTGGAGCTCTTTTAGAGCAGCTTAAGGAGTTAAATTCTCAAG
GCTTTGAGATTATTTTAGTTTCTTCAGGCGCTGTTGGTGTTGGCCGCCAA
AGGCTTAGATACAGAAAATTGGTCAATAGCAGCTTGGCTGATCTCCAAAA
GCCGCAGAATGAGCTTGATGGGAAGGCTTGTGCCGCAGTTGGGCAGAGTA
GTCTCATGGCTCTTTATGATACCTTGTTCAGCCAGCTTGATGTGACCTCA
TCCCAACTTCTTGTGACGGATAGTGATTTTAGGGATGAAGATTTCAGAAA
GCAACTCTATGACACTGTTCAATCATTGTTAGATTTGAGGGTTATTCCTA
TTTTTAATGAAAATGACGCAGTTAGTACTAGGAAAGCACCATACGAGGAT
TCTTCTGGTATATTTTGGGATAATGACAGTCTGGCAGGATTATTGGCTTT
GGAACTAAAAGCTGATCTTCTTGTTCTGTTGAGTGATGTAGAGGGCCTCT
ATAGTGGTCCTCCAAGTGAGCCAAATTCGAAGCTGATCCATACATATATA
AGAGCAAAACACCAAGCAGAAATAACATTTGGAGACAAGTCAAGGGTTGG
AAGAGGGGGAATGACTGCTAAGGTCAATGCAGCTTATTGTGCAGCTTGCG
CCGGTATCCCTGTTGTTATTACTAGTGGCTTTGCCATGGACAGCATCA
back to top