FC931689

Overview
NameFC931689
Unique NameFC931689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931689 vs. ExPASy Swiss-Prot
Match: SULP3_CAEEL (Sulfate permease family protein 3 OS=Caenorhabditis elegans GN=sulp-3 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 57/211 (27.01%), Postives = 101/211 (47.87%), Query Frame = 3
Query:    3 VILG-TLLVYLSHAERHGVQVIGYLKKGLNPPSFS--DLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLID-YEAVIHLFKVDKFDFIVCIGAYVGVVFGSIQIGLVIAISISVLRVLL 623
            V++G T   Y   + RH V+V+G +     PPS    DL+        AI       + A+A  I V +       Y I+  +E+ A G + +  S    +  T  F+RS V    G  T ++ +  S+A++  +L + P   Y P  +LSA+I+ A  G+++ +  +  L+ V K DF + + ++   V   +  GL++AI  +VL  ++
Sbjct:  318 VVVGITATNYAELSLRHDVKVVGNIPTEFPPPSLPRFDLIRHIGLNAAAI------AITAVAIHITVAKVVEKRYKYKINHGQELYALGFVGVLSSFFPVFPVTSGFARSVVGAAVGGSTQLTCLFSSLALLSVILCIGPALEYLPQCILSAMIIFAQKGMLEKFGELKSLWPVFKIDFTIWLMSFFLTVCYDMGEGLLMAIGFAVLTTII 522          
BLAST of FC931689 vs. ExPASy Swiss-Prot
Match: S26A9_XENTR (Solute carrier family 26 member 9 OS=Xenopus tropicalis GN=slc26a9 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 50/194 (25.77%), Postives = 92/194 (47.42%), Query Frame = 3
Query:   42 ERHGVQVIGYLKKGLNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAML-GLIDYEAVIHLFKVDKFDFIVCIGAYVGVVFGSIQIGLVIAISISVLRVL 620
            ER+ + V+G++  G   P+  ++      + TA    I+  VI     +A+GR+      + +D N+EM+A G  N  GS    ++     S +     AG K+ +++  + M+VMVT+L L    +  P  VL A+I   +   L       +L+K  K D +V + ++       +  GL + ++ S+L V+
Sbjct:  303 ERYHMNVVGHIPLGFPSPTVPNVTQWDEMVGTAFSLAIVGYVI----NLAMGRTLGAKHGFDVDANQEMLALGSGNFFGSFFFIHVICCALSVTLAVDGAGGKSQIASFFVMMSVMVTILALGTYLNPLPKSVLGALIAVNLKNSLKQLSDPFYLWKKSKLDCLVWLVSFFSTFILGLPYGLAVGVAFSILVVI 492          
BLAST of FC931689 vs. ExPASy Swiss-Prot
Match: S2610_MOUSE (Solute carrier family 26 member 10 OS=Mus musculus GN=Slc26a10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 46/178 (25.84%), Postives = 90/178 (50.56%), Query Frame = 3
Query:    3 VILGTLLVYLSHAE-RHGVQVIGYLKKGLNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGL-IDYEAVIHLFKVDKFDFI 530
            V+L T+L + S  + R+ VQV+G L  G   P    L  +   L  ++   ++T     A   ++   +A   +Y I+ N+E++A G+ N+  S  SC+  +   + +++  +AG  T ++ +     V+  LL+L P F+Y P  VL+ I +++M  +    + +  L+ +   DF+
Sbjct:  311 VLLATVLCFTSSLDTRYNVQVVGPLPGGFPQPLLPTLDELPRILADSLPISLVT----FAVSTSLASIYADKYSYTIEPNQELLAHGVSNLISSLFSCFPNSATLATTSLLVDAGGNTQLAGLFSCAVVLAALLWLRPFFYYLPKAVLACINISSMRQMFFQMQELPQLWHISHVDFV 484          
BLAST of FC931689 vs. ExPASy Swiss-Prot
Match: S2610_HUMAN (Solute carrier family 26 member 10 OS=Homo sapiens GN=SLC26A10 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 48/189 (25.40%), Postives = 94/189 (49.74%), Query Frame = 3
Query:    3 VILGTLLVYLSHAE-RHGVQVIGYLKKGLNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLI-DYEAVIHLFKVDKFDFI-----VCIGAY 548
            V+L ++L + S  + R+ VQ++G L  G   P   +L  +   L  ++   +++     A   ++    A   +Y ID N+E +A G  N+  S  SC+  +   + + +  +AG KT ++ +     V+  LL+L P F+Y P  VL+ I +++M  +    + +  L+ + + DF+     +CI +Y
Sbjct:  237 VLLASVLCFTSSVDTRYQVQIVGLLPGGFPQPLLPNLAELPRILADSLPIALVS----FAVSASLASIHADKYSYTIDSNQEFLAHGASNLISSLFSCFPNSATLATTNLLVDAGGKTQLAGLFSCTVVLSVLLWLGPFFYYLPKAVLACINISSMRQVFCQMQELPQLWHISRVDFLLQVPGLCILSY 421          
BLAST of FC931689 vs. ExPASy Swiss-Prot
Match: SULH3_SCHPO (Probable sulfate permease C320.05 OS=Schizosaccharomyces pombe GN=SPCC320.05 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 36/173 (20.81%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  126 YLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKFDFIVCIGAYVGVVFG--------SIQIGLVIAISISVLRVL 620
            ++T +++TG++   +A  + +   ++ ++  N  I  N+E+I+ G  NI  S        G + R+  N  +G +T V+ I  S+ +++   F+ P+F   P  +L++++++  + L   +A + +FK+ +    + +   +G++F          ++ G++  +SI+V++++
Sbjct:  328 FITQSLQTGVMCSFLAFIDTVIAVKAISLQTNNLIRSNRELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQVATIACSVLILLATFFIMPVFSTVPTCMLASMVVSLGVSLF-ADAAVEIFKLAR----IRVWWELGIIFSIATCTMMFGLETGIIFGLSITVMQII 495          
BLAST of FC931689 vs. ExPASy Swiss-Prot
Match: SULX_YEAST (Putative sulfate transporter YPR003C OS=Saccharomyces cerevisiae GN=YPR003C PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 55/230 (23.91%), Postives = 100/230 (43.48%), Query Frame = 3
Query:    3 VILGTLLVYLSH--AERHGVQVIG--------YLKKGLNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTP---LVVLSAIIMAAMLGLIDYEAVIHLFKVDKFDFIVCIGAYVGVVFGSIQIGLVIAISISVLRVLLFVAGRGLQFL 653
            V++ T+L+ +      R+G+ +IG         LK  L  P       + P L +A    +I  ++   E     +S     N  +  N+E++A G MNI  S        G + RS +N  +G ++ +S + M +  ++T+  L    HY P   L V++ II  ++L  +  +   HL      +  V    +   +F SI+ G+ I    S++ ++   A   +Q L
Sbjct:  327 VVIVTILISMKFNLKHRYGISIIGDFSMDNFDELKNPLTRPRRK----LIPDLFSA---SLIVAMLGFFESTTASKSLGTTYNLTVSSNRELVALGFMNIVISLFGALPAFGGYGRSKINALSGAQSVMSGVFMGVITLITMNLLLQFVHYIPNCVLSVITTIIGISLLEEVPGDIKFHLRCGGFSELFVFAVTFCTTIFYSIEAGICIGCVYSIINIIKHSAKSRIQIL 549          
The following BLAST results are available for this feature:
BLAST of FC931689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SULP3_CAEEL3.086e-1227.01Sulfate permease family protein 3 OS=Caenorhabditi... [more]
S26A9_XENTR5.264e-1225.77Solute carrier family 26 member 9 OS=Xenopus tropi... [more]
S2610_MOUSE6.875e-1225.84Solute carrier family 26 member 10 OS=Mus musculus... [more]
S2610_HUMAN1.532e-1125.40Solute carrier family 26 member 10 OS=Homo sapiens... [more]
SULH3_SCHPO2.613e-1120.81Probable sulfate permease C320.05 OS=Schizosacchar... [more]
SULX_YEAST3.412e-1123.91Putative sulfate transporter YPR003C OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC34107H08EF PostHarvP1 Citrus clementina cDNA clone C34107H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931689 ID=FC931689; Name=FC931689; organism=Citrus clementina; type=EST; length=667bp
CGGTTATTTTGGGAACCTTACTCGTTTATCTTTCCCACGCTGAGAGACAC
GGTGTTCAAGTGATAGGGTACTTGAAGAAGGGATTGAATCCACCTTCATT
TTCGGATTTGGTGTTCGTGTCACCTTATCTCACAACAGCTATCAAAACTG
GCATCATCACTGGCGTCATTGCTATGGCTGAAGGGATAGCTGTAGGAAGA
AGCTTTGCCATGTTCAAGAATTATCATATTGATGGGAACAAAGAGATGAT
AGCTTTCGGGATGATGAACATAGCTGGTTCTTGCACTTCTTGCTATCTCA
CAACAGGGCCGTTTTCGCGGTCAGCTGTGAACTTCAATGCAGGATGCAAG
ACAGCAGTGTCGAACATTGTTATGTCAATGGCAGTGATGGTCACATTGCT
TTTCTTAACACCATTGTTCCATTACACTCCCCTTGTGGTTTTATCCGCAA
TCATAATGGCTGCGATGCTCGGTCTCATTGACTACGAAGCAGTCATCCAT
CTATTTAAAGTTGACAAATTTGATTTCATAGTGTGCATTGGTGCATACGT
TGGCGTGGTCTTTGGCAGCATCCAAATTGGGTTAGTCATTGCGATATCAA
TTTCTGTGCTGAGGGTACTTCTGTTTGTGGCAGGCCGAGGACTTCAGTTC
TTGGTAACATTCCAAAT
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