FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF2_DANRE (E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio GN=smurf2 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.093e-73
Identity = 123/235 (52.34%), Postives = 168/235 (71.49%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            ++M+    DL KRLM+KF GE+GLDYGG++RE+ +LLSHEM NP+Y LF+YS  D YTLQINP S VNPEHL+YF F+GR++G+A+FH  ++D  F   FYK +L K ++L DME VD DLH +L W LDNDI G+++ TF V+   +GE    +L P G+ IPVT + K +Y+ L   W+ ++ +E QF A   GFNE+IP  L+  FDE+ELEL++ G+  ID+ DWK +TRL
Sbjct:  426 QVMKMRPKDLWKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKPITLDDMESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVTQDTKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIVCGLGKIDINDWKSNTRL 660          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF2_HUMAN (E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.571e-73
Identity = 126/235 (53.62%), Postives = 168/235 (71.49%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            ++M+    DL KRLMIKF GE+GLDYGG++RE+ +LLSHEM NP+Y LF+YS  D YTLQINP S VNPEHL+YF F+GR++G+A+FH  ++D  F   FYK +L K ++L DME VD DLH +L W L+NDI G+++ TF V+   +GE    +L P G+ IPV  ENK +Y+ L   W+ ++ +E QF A   GFNE+IP  L+  FDE+ELEL+I G+  IDV DWK +TRL
Sbjct:  409 QVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRL 643          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF2_XENLA (E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.663e-73
Identity = 124/235 (52.77%), Postives = 168/235 (71.49%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            ++M+    DL KRLMIKF GE+GLDYGG++RE+ +LLSH+M NP+Y LF+YS  D YTLQINP S VNPEHL+YF F+GR++G+A+FH  ++D  F   FYK +L K ++L DME VD DLH +L W L+NDI G+++ TF V+   +GE    +L P G+ IPVT + K +Y+ L   W+ ++ +E QF A   GFNE+IP  L+  FDE+ELEL+I G+  IDV DWK +TRL
Sbjct:  412 QVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHDMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKPITLDDMESVDPDLHNSLVWILENDITGVLDHTFCVEHNAYGELIQHELKPSGKSIPVTEDTKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIICGLGKIDVSDWKSNTRL 646          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: NEDD4_DROME (E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster GN=Nedd4 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.090e-73
Identity = 129/225 (57.33%), Postives = 176/225 (78.22%), Query Frame = 2
Query:   29 LKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGV-NPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            LK +L ++F+GE GLDYGGL+RE+F+LLS EMFNP+Y LFEYSA DNYTLQIN  SG+ N EHL+YFKFIGR+ G+A++H + LD+FFI  FYKMML+K + L+DME VD + + +L W  +ND   I+ELTF +D++ FG++   +L PGG +I VTNENK +YI+LV EW+ + RV+EQ  +F+ GF  +IP +L+ +FDE ELELL+ GI +IDV+DW+E+T
Sbjct:  676 LKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNYTLQINNGSGLCNEEHLSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQKPIDLKDMESVDTEYYNSLMWIKEND-PRILELTFCLDEDVFGQKSQHELKPGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIKIFDEHELELLMCGIQNIDVKDWRENT 899          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF1_MOUSE (E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.039e-72
Identity = 122/235 (51.91%), Postives = 169/235 (71.91%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            +IM+    DLKKRLM+KF GE+GLDYGG++RE+ +LL HEM NP+Y LF+YS  + YTLQINP S +NP+HL+YF F+GR++GLA+FH  +++  F   FYK +L K + L D+E VD +LH++L W L+NDI  +++ TF V+   FG     +L P GR++PVT ENK +Y+ L   W+ M+ +E QF A   GFNELIP  L+  FD++ELEL+IGG+  ID+ DWK +TRL
Sbjct:  389 QIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLLGKPIQLSDLESVDPELHKSLVWILENDITPVLDHTFCVEHNAFGRILQHELKPNGRNVPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELIPQHLLKPFDQKELELIIGGLDKIDLNDWKSNTRL 623          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: NEDD4_RAT (E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.772e-72
Identity = 130/230 (56.52%), Postives = 174/230 (75.65%), Query Frame = 2
Query:   20 ASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSA-HDNYTLQINPHSGV-NPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            A  LK RL I+FDGE GLDYGG++RE+FFL+S EMFNP+Y LFEYSA  DNYTLQINP+SG+ N +HL+YFKFIGRV G+A++H + LD FFI  FYKMML+K ++L DME VD + + +L W L+ND   + +L F +D+E FG+    +L  GG ++ VTN+NK +YI LV +W+ + R+++Q  AF  GF ELIP DL+ +FDE ELELL+ G+ D+DV DW+EHT+
Sbjct:  552 ADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATEDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEYYSSLRWILENDPTEL-DLRFIIDEELFGQTHQHELKTGGSEVVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTK 780          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF1_HUMAN (E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.156e-72
Identity = 121/235 (51.49%), Postives = 168/235 (71.49%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            +IM+    DLKKRLM+KF GE+GLDYGG++RE+ +LL HEM NP+Y LF+YS  + Y LQINP S +NP+HL+YF F+GR++GLA+FH  +++  F   FYK +L K + L D+E VD +LH++L W L+NDI  +++ TF V+   FG     +L P GR++PVT ENK +Y+ L   W+ M+ +E QF A   GFNELIP  L+  FD++ELEL+IGG+  ID+ DWK +TRL
Sbjct:  415 QIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYMLQINPDSSINPDHLSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLLGKPIQLSDLESVDPELHKSLVWILENDITPVLDHTFCVEHNAFGRILQHELKPNGRNVPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELIPQHLLKPFDQKELELIIGGLDKIDLNDWKSNTRL 649          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF1_XENLA (E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laevis GN=smurf1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.559e-71
Identity = 119/235 (50.64%), Postives = 168/235 (71.49%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            +IM+    DLKKRLM+KF GE+GLDYGG++RE+ +LL HEM NP+Y LF+YS  + YTLQINP S +NP+HL+YF F+GR++GLA+FH  +++  F   FYK +L K + L D+E VD +LH++L W L+NDI  +++ TF V+   FG     +L P G+++ VT ENK +Y+ L   W+ M+ +E QF A   GFNELIP  L+  F+++ELEL+IGG+  ID+ DWK +TRL
Sbjct:  389 QIMKMRPKDLKKRLMVKFRGEEGLDYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRIMGLAVFHGHYINGGFTVPFYKQLLGKPIQLSDLESVDPELHKSLVWILENDITSVLDHTFCVEHNAFGRLLQHELKPNGKNLQVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFNELIPQHLLKPFEQKELELIIGGLDKIDISDWKANTRL 623          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 123/232 (53.02%), Postives = 172/232 (74.14%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            I + S SD+KK+L+I+F  EDGLDYGG+SREFF++LSH +FNP Y LFEY+  DNY LQI+P S VNP+  +YF+F+GRV+GLAI+HRR+LD  F+  FYK +L+K + L+D++ VDE  + +L W  +ND+D  + L FSV++ +FGE  T+DLIP GR+I V N+NK  Y++ +TE K++   EEQF+A   G NELIP  ++ +F+E EL+ L+ G  DIDV+DWK  T
Sbjct:  334 ISKLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIFNPGYSLFEYATDDNYGLQISPLSSVNPDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPLCLEDVKDVDEVYYESLKWIKNNDVDESLCLNFSVEENRFGESVTVDLIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNENELDTLLNGKRDIDVQDWKRFT 565          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: ITCH_MOUSE (E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 5.899e-68
Identity = 118/233 (50.64%), Postives = 167/233 (71.67%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEH 697
            +IM  S  DL++RL + F GE+GLDYGG++RE+FFLLSHE+ NP YCLFEY+  DNY LQINP S +NP+HL YF+FIGR + +A+FH +F+D+ F   FYK +L K V L+D+E +D + + +L W  +N+I+   +E+ FSVD E  GE ++ DL P G +I VT ENK +YI +V EW++ + VEEQ  AF  GFNE++P   +  FD +ELE+L+ G+ +ID+ DW+ H
Sbjct:  525 QIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAGKDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKENNIEECGLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRH 757          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
SMUF2_DANRE2.093e-7352.34E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio ... [more]
SMUF2_HUMAN3.571e-7353.62E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens... [more]
SMUF2_XENLA4.663e-7352.77E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laev... [more]
NEDD4_DROME6.090e-7357.33E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila m... [more]
SMUF1_MOUSE1.039e-7251.91E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus... [more]
NEDD4_RAT1.772e-7256.52E3 ubiquitin-protein ligase NEDD4 OS=Rattus norveg... [more]
SMUF1_HUMAN5.156e-7251.49E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens... [more]
SMUF1_XENLA2.559e-7150.64E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laev... [more]
PUB2_SCHPO2.166e-7053.02E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
ITCH_MOUSE5.899e-6850.64E3 ubiquitin-protein ligase Itchy OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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