FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: ITCH_HUMAN (E3 ubiquitin-protein ligase Itchy homolog OS=Homo sapiens GN=ITCH PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 5.899e-68
Identity = 118/233 (50.64%), Postives = 167/233 (71.67%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEH 697
            +IM  S  DL++RL + F GE+GLDYGG++RE+FFLLSHE+ NP YCLFEY+  DNY LQINP S +NP+HL YF+FIGR + +A+FH +F+D+ F   FYK +L K V L+D+E +D + + +L W  +N+I+   +E+ FSVD E  GE ++ DL P G +I VT ENK +YI +V EW++ + VEEQ  AF  GFNE++P   +  FD +ELE+L+ G+ +ID+ DW+ H
Sbjct:  564 QIMSFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAGKDNYCLQINPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRH 796          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SUDX_DROME (E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster GN=Su(dx) PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.242e-67
Identity = 122/234 (52.14%), Postives = 170/234 (72.65%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +IMR  A +L++RL I F GE+GLDYGG+SRE+FFLLSHE+ NP YCLFEY+  +NY+LQINP S VNP+HL YFKFIGR + +A++H RF+ S F   FYK ML KK++++D+E +D + + +L W  DN+ID   +EL FSVD E  G+    +L   G    VT ENK +YI L+TEW++ + +E+Q   F+ GFNE++P + +  FDERELEL++ G+ D+DVEDW+ +T
Sbjct:  610 QIMRLPAYELRRRLYIIFRGEEGLDYGGVSREWFFLLSHEVLNPMYCLFEYANKNNYSLQINPASYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIETIDPEFYNSLIWVKDNNIDECGLELWFSVDFEVLGQIIHHELKENGEKERVTEENKEEYITLMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDVEDWQRNT 843          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.230e-65
Identity = 116/234 (49.57%), Postives = 170/234 (72.65%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +IM     DL++RL + F GE+GLDYGGL+RE+FFLLSHE+ NP YCLFEY+  +NY LQINP S +NP+HL+YF FIGR + +A+FH +F+D+ F   FYK ML KK++++D+E +D + + +L W  DN+I+   +E+ FSVD E  G+  + DL  GG +I VT ENK +YI L+TEW+  + V+EQ  AF+ GFNE++P   +  FDE+ELE+++ G+ ++D+ DW+ +T
Sbjct:  579 QIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNT 812          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.230e-65
Identity = 116/234 (49.57%), Postives = 170/234 (72.65%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +IM     DL++RL + F GE+GLDYGGL+RE+FFLLSHE+ NP YCLFEY+  +NY LQINP S +NP+HL+YF FIGR + +A+FH +F+D+ F   FYK ML KK++++D+E +D + + +L W  DN+I+   +E+ FSVD E  G+  + DL  GG +I VT ENK +YI L+TEW+  + V+EQ  AF+ GFNE++P   +  FDE+ELE+++ G+ ++D+ DW+ +T
Sbjct:  583 QIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNT 816          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 6.749e-64
Identity = 112/234 (47.86%), Postives = 165/234 (70.51%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +IM     DL++RL I   GE+GLDYGG++RE+FFLLSHE+ NP YCLFEY+  +NY LQINP S +NP+HL YF+FIGR + +A++H +F+D+ F   FYK ML K+ +L+D+E +D + + ++ W  +N+++   +EL F  D E  G+  T +L  GG  I VT ENK +YI L+T+W+  + VEEQ  AF+ GFNE+ P + +  FDE+ELEL++ G+ +ID+ DW++ T
Sbjct:  531 QIMNMKPYDLRRRLYIIMRGEEGLDYGGIAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASSINPDHLTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPEFYNSIVWIKENNLEECGLELYFIQDMEILGKVTTHELKEGGESIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKST 764          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.151e-63
Identity = 111/233 (47.64%), Postives = 166/233 (71.24%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEH 697
            +IM     DL++RL I   GE+GLDYGG++RE+FFLLSHE+ NP YCLFEY+  +NY LQINP S +NP+HL YF+FIGR + +A++H +F+D+ F   FYK ML K+ +L+D+E +D + + ++ W  +N+++   +EL F  D E  G+  T +L  GG +I VT ENK +YI L+T+W+  + VEEQ  AF+ GFNE+ P + +  FDE+ELEL++ G+ +ID+ DW+++
Sbjct:  531 QIMNMKPYDLRRRLYIIMRGEEGLDYGGIAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASSINPDHLTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPEFYNSIVWIKENNLEECGLELFFIQDMEILGKVTTHELKEGGENIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKN 763          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HECW2_MOUSE (E3 ubiquitin-protein ligase HECW2 OS=Mus musculus GN=Hecw2 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.350e-63
Identity = 116/234 (49.57%), Postives = 167/234 (71.37%), Query Frame = 2
Query:    2 EIMRQSASDLKK-RLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +IM  S  DL++ +L + F GE+GLDY G SREFFFL+S E+FNP+Y LFEYSA+D YT+QI+P S     H  +F+F GR++GLA+ H+  LD+FF   FYK +LR    L D+E +DE+ H++L W  DNDI  I++LTF+V++E FG+    +L PGG +IPVT +NK +YIE + +W+I + V +Q ++ + GF E++   LV+VFD RELEL+I G A+ID+ DW+ +T
Sbjct: 1238 QIMGYSRKDLQRNKLYVTFVGEEGLDYSGPSREFFFLVSRELFNPYYGLFEYSANDTYTVQISPMSAFVDNHHEWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRILCDLSDLEYLDEEFHQSLQWMKDNDIHDILDLTFTVNEEVFGQITERELKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVRGFYEVVDARLVSVFDARELELVIAGTAEIDLNDWRNNT 1471          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HECW2_HUMAN (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.350e-63
Identity = 116/234 (49.57%), Postives = 167/234 (71.37%), Query Frame = 2
Query:    2 EIMRQSASDLKK-RLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +IM  S  DL++ +L + F GE+GLDY G SREFFFL+S E+FNP+Y LFEYSA+D YT+QI+P S     H  +F+F GR++GLA+ H+  LD+FF   FYK +LR    L D+E +DE+ H++L W  DNDI  I++LTF+V++E FG+    +L PGG +IPVT +NK +YIE + +W+I + V +Q ++ + GF E++   LV+VFD RELEL+I G A+ID+ DW+ +T
Sbjct: 1232 QIMGYSRKDLQRNKLYVTFVGEEGLDYSGPSREFFFLVSRELFNPYYGLFEYSANDTYTVQISPMSAFVDNHHEWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRILCDLSDLEYLDEEFHQSLQWMKDNDIHDILDLTFTVNEEVFGQITERELKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVRGFYEVVDARLVSVFDARELELVIAGTAEIDLSDWRNNT 1465          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HECW1_HUMAN (E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.401e-61
Identity = 112/234 (47.86%), Postives = 165/234 (70.51%), Query Frame = 2
Query:    2 EIMRQSASDLKK-RLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            ++M  S  +L++ +L + F GE+GLDY G SREFFFLLS E+FNP+Y LFEYSA+D YT+QI+P S     HL +F+F GR++GLA+ H+  LD+FF   FYK +LR    L D+E +DE+ H++L W  DN+I  I++LTF+V++E FG+    +L  GG +  VT +NK +YIE + +W++ + V +Q +A + GF E++   LV+VFD RELEL+I G A+ID+ DW+ +T
Sbjct: 1266 QVMAYSRKELQRNKLYVTFVGEEGLDYSGPSREFFFLLSQELFNPYYGLFEYSANDTYTVQISPMSAFVENHLEWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRLPCDLSDLEYLDEEFHQSLQWMKDNNITDILDLTFTVNEEVFGQVTERELKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALVRGFYEVVDSRLVSVFDARELELVIAGTAEIDLNDWRNNT 1499          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: TOM1_NEUCR (E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa GN=B11B22.010 PE=3 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 6.984e-61
Identity = 111/230 (48.26%), Postives = 165/230 (71.74%), Query Frame = 2
Query:   14 QSASDLK-KRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            + A +LK  +L I+F GE+G+D GG++RE+F +LS +MF+P Y LF   + D  T   N  S +N EHL +FKFIGR++G A++  R L+ +F  A YK +L K VS++DME  D D +++L W L+NDI  I+  TFSV+D+ FGE + +DLI  GR+IPVT ENK +Y+ L+ E K++  V++Q  AF++GF+E+IP +L+ +F+E+ELELLI G+ DID++DWK +T
Sbjct: 3689 KKADELKFGKLNIRFQGEEGVDAGGVTREWFQVLSRQMFDPNYVLFVPVSSDRTTFHPNKLSPINDEHLPFFKFIGRIIGKALYEGRLLECYFSRAVYKRILGKPVSVKDMESFDPDYYKSLVWMLENDITDIITETFSVEDDVFGEVKVVDLIENGRNIPVTEENKHEYVRLIVEHKLITSVKDQMKAFLTGFHEIIPEELIAIFNEQELELLISGLPDIDIDDWKANT 3918          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ITCH_HUMAN5.899e-6850.64E3 ubiquitin-protein ligase Itchy homolog OS=Homo ... [more]
SUDX_DROME2.242e-6752.14E3 ubiquitin-protein ligase Su(dx) OS=Drosophila m... [more]
WWP1_MOUSE1.230e-6549.57NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]
WWP1_HUMAN1.230e-6549.57NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom... [more]
WWP2_HUMAN6.749e-6447.86NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom... [more]
WWP2_MOUSE1.151e-6347.64NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]
HECW2_MOUSE3.350e-6349.57E3 ubiquitin-protein ligase HECW2 OS=Mus musculus ... [more]
HECW2_HUMAN3.350e-6349.57E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens ... [more]
HECW1_HUMAN2.401e-6147.86E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens ... [more]
TOM1_NEUCR6.984e-6148.26E3 ubiquitin-protein ligase TOM1-like OS=Neurospor... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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