FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HECW1_MOUSE (E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.654e-60
Identity = 111/234 (47.44%), Postives = 165/234 (70.51%), Query Frame = 2
Query:    2 EIMRQSASDLKK-RLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            ++M  S  +L++ +L I F GE+GLDY G SREFFFLLS E+FNP+Y LFEYSA+D YT+QI+P S     +L +F+F GR++GLA+ H+  LD+FF   FYK +L+    L D+E +DE+ H++L W  DN+I  I++LTF+V++E FG+    +L  GG +  VT +NK +YIE + +W++ + V +Q +A + GF E++   LV+VFD RELEL+I G A+ID+ DW+ +T
Sbjct: 1264 QVMAYSRKELQRNKLYITFVGEEGLDYSGPSREFFFLLSQELFNPYYGLFEYSANDTYTVQISPMSAFVENYLEWFRFSGRILGLALIHQYLLDAFFTRPFYKGLLKLPCDLSDLEYLDEEFHQSLQWMKDNNITDILDLTFTVNEEVFGQVTERELKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALLRGFYEVVDSRLVSVFDARELELVIAGTAEIDLNDWRNNT 1497          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: TOM1_YEAST (E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.538e-59
Identity = 111/221 (50.23%), Postives = 152/221 (68.78%), Query Frame = 2
Query:   38 RLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +L I F GE G+D GG++RE++ +LS +MFNP Y LF     D  T   N  SG+NPEHL++FKFIG ++G AI  + FLD  F    YK +L + VSL+DME +D D +++L W L+NDI  I+E TFSV+ + +GE + I+LI GG+DI VT  NK  Y++ V E+K+   V+EQ D F+ GF  LI  DL+ +FDE+ELELLI G+ DIDV+DWK +T
Sbjct: 2940 KLEITFKGESGVDAGGVTREWYQVLSRQMFNPDYALFLPVPSDKTTFHPNRTSGINPEHLSFFKFIGMIIGKAIRDQCFLDCHFSREVYKNILGRPVSLKDMESLDPDYYKSLVWILENDITDIIEETFSVETDDYGEHKVINLIEGGKDIIVTEANKQDYVKKVVEYKLQTSVKEQMDNFLVGFYALISKDLITIFDEQELELLISGLPDIDVDDWKNNT 3160          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: TOM1_ASHGO (Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii GN=TOM1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.484e-58
Identity = 108/230 (46.96%), Postives = 159/230 (69.13%), Query Frame = 2
Query:   14 QSASDLK-KRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            +S  D+K  +L I F GE G+D GG++RE++ +LS +MFNP Y LF   A D  T + N  SG+NPEHL++FKFIG ++G AI  + FLD  F    YK +L K V+L+DME +D D +++L W L+NDI  I+E TFSV+ + +GE + I+LI  G  + VT +NK  Y++ + E+K+   V++Q + F+ GF  +IP DL+++FDE+ELELL+ G+ DIDV+DWK +T
Sbjct: 2921 KSNEDIKISKLEISFKGEAGVDAGGITREWYQVLSRQMFNPDYALFIPVASDKTTFRPNRTSGINPEHLSFFKFIGMIIGKAISDQCFLDCHFSREVYKNILGKPVALKDMESLDLDYYKSLIWILENDITDIIEETFSVETDDYGEHKVIELIENGAHVAVTEQNKHDYVKKIVEYKLQTSVKDQMENFLQGFYAIIPKDLISIFDEQELELLVSGLPDIDVDDWKNNT 3150          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HACE1_XENLA (E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.968e-55
Identity = 104/233 (44.64%), Postives = 157/233 (67.38%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            + + +   LK+ + ++F GE+G+  G + RE+F +LS EM NP Y LF  SA D  T Q N +S VNP+HLNYF+F G ++GLA++HR+ ++ +F  +FYK +L   V+ QD+  +D +  +NL W LDNDI  + +ELTFSV+ + FG    + L PGG  I VT ENK +Y++LVTE ++ + ++ Q + F+ GF+  IPP L+ +FDE ELELL+ G+ +IDV DW ++T
Sbjct:  605 VFKSNCEKLKQGIAVRFHGEEGMGQG-VVREWFDILSSEMINPDYALFTQSA-DGTTFQPNSNSSVNPDHLNYFRFAGEILGLALYHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAMEEVPLKPGGASILVTQENKAEYVQLVTELRMTRAIQPQINGFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVNDWMKNT 835          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HACE1_XENTR (E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.727e-55
Identity = 103/233 (44.21%), Postives = 157/233 (67.38%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            + + +   LK+ + ++F GE+G+  G + RE+F +LS E+ NP Y LF  SA D  T Q N +S VNP+HLNYF+F G ++GLA++HR+ ++ +F  +FYK +L   V+ QD+  +D +  +NL W LDNDI  + +ELTFSV+ + FG    + L PGG  I VT ENK +Y++LVTE ++ + ++ Q + F+ GF+  IPP L+ +FDE ELELL+ G+ +IDV DW ++T
Sbjct:  573 VFKSNCEKLKQGIAVRFHGEEGMGQG-VVREWFDILSSEIINPDYALFTQSA-DGTTFQPNSNSSVNPDHLNYFRFAGEILGLALYHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAMEEVPLKPGGASILVTQENKAEYVQLVTELRMTRAIQPQINGFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVNDWMKNT 803          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: PTR1_SCHPO (E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.276e-54
Identity = 99/230 (43.04%), Postives = 156/230 (67.83%), Query Frame = 2
Query:   14 QSASDLK-KRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            + A ++K  +L I F  E+G+D GG++RE+  +L+ +MFNP Y LF     D  T   N  S VNP+HL++FKF GR++G A++  R LD  F  A YK ML + VS++D+E +D D +++L W L+NDI  I+   F+V+ + FGE+  +DLIP GR+IPVT  NK  Y+  + ++K+ + V++Q  + + GF+++IP  L+ +F+E+ELELLI G+ +ID++DWK +T
Sbjct: 2890 KDADEVKFSKLNIHFRDEEGVDAGGVTREWLQVLARQMFNPDYALFLPVTGDATTFHPNRDSSVNPDHLSFFKFTGRIIGKALYDGRLLDCHFSRAVYKHMLHRSVSVKDIESLDPDYYKSLVWMLNNDITDIITEEFAVEKDVFGEKTVVDLIPNGRNIPVTELNKQNYVNRMVDYKLRESVKDQLKSLLDGFSDIIPSHLIQIFNEQELELLISGLPEIDIDDWKNNT 3119          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HUWE1_MOUSE (E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=4)

HSP 1 Score: 212.616 bits (540), Expect = 1.666e-54
Identity = 104/234 (44.44%), Postives = 151/234 (64.53%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            E+ R+S  ++K RL I F+GE+G D GGL RE++ ++S EMFNP Y LF  S  D  T  INP S  NP HL+YFKF+GR+V  A++  R L+ +F  +FYK +L K V   DME  D   ++ L + L+ND+  +  +LTFS + ++FG     DL P G +I VT ENK +Y+ LV + ++   + +Q  AF+ GF E+IP  L+++F E+ELELLI G+  ID++D K +T
Sbjct: 4036 ELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNT 4269          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HUWE1_HUMAN (E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.666e-54
Identity = 104/234 (44.44%), Postives = 151/234 (64.53%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            E+ R+S  ++K RL I F+GE+G D GGL RE++ ++S EMFNP Y LF  S  D  T  INP S  NP HL+YFKF+GR+V  A++  R L+ +F  +FYK +L K V   DME  D   ++ L + L+ND+  +  +LTFS + ++FG     DL P G +I VT ENK +Y+ LV + ++   + +Q  AF+ GF E+IP  L+++F E+ELELLI G+  ID++D K +T
Sbjct: 4033 ELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNT 4266          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HACE1_MOUSE (E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.411e-53
Identity = 103/233 (44.21%), Postives = 159/233 (68.24%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            + + + + LK+ + ++F GE+G+  G + RE+F +LS+E+ NP Y LF  SA D  T Q N +S VNP+HLNYF+F G+++GLA+ HR+ ++ +F  +FYK +L   V+ QD+  +D +  +NL W LDNDI  + +ELTFSV+ + FG    + L PGG  I VT  NK +Y++LVTE ++ + ++ Q +AF+ GF+  IPP L+ +FDE ELELL+ G+ +IDV DW ++T
Sbjct:  570 VSKANCAKLKQGIAVRFHGEEGMGQG-VVREWFDILSNEIVNPDYALFTQSA-DGTTFQPNSNSYVNPDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVNDWIKNT 800          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HACE1_HUMAN (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.411e-53
Identity = 103/233 (44.21%), Postives = 159/233 (68.24%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            + + + + LK+ + ++F GE+G+  G + RE+F +LS+E+ NP Y LF  SA D  T Q N +S VNP+HLNYF+F G+++GLA+ HR+ ++ +F  +FYK +L   V+ QD+  +D +  +NL W LDNDI  + +ELTFSV+ + FG    + L PGG  I VT  NK +Y++LVTE ++ + ++ Q +AF+ GF+  IPP L+ +FDE ELELL+ G+ +IDV DW ++T
Sbjct:  570 VSKANCAKLKQGIAVRFHGEEGMGQG-VVREWFDILSNEIVNPDYALFTQSA-DGTTFQPNSNSYVNPDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAMEEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDEYELELLLSGMPEIDVSDWIKNT 800          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
HECW1_MOUSE2.654e-6047.44E3 ubiquitin-protein ligase HECW1 OS=Mus musculus ... [more]
TOM1_YEAST8.538e-5950.23E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces ... [more]
TOM1_ASHGO2.484e-5846.96Probable E3 ubiquitin-protein ligase TOM1 OS=Ashby... [more]
HACE1_XENLA1.968e-5544.64E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevi... [more]
HACE1_XENTR5.727e-5544.21E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropi... [more]
PTR1_SCHPO1.276e-5443.04E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharo... [more]
HUWE1_MOUSE1.666e-5444.44E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus ... [more]
HUWE1_HUMAN1.666e-5444.44E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens ... [more]
HACE1_MOUSE1.411e-5344.21E3 ubiquitin-protein ligase HACE1 OS=Mus musculus ... [more]
HACE1_HUMAN1.411e-5344.21E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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