FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51
Identity = 107/240 (44.58%), Postives = 158/240 (65.83%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSV--DDEKF-----GERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            ++  +S  DLK RL ++F GE+G+D GGL+RE++ LLS  +F+    LF    +D  T Q NP+S    EHL+YFKF+GR+V  A+F  + LD +F  +FYK +L  KV+  D+E VD D ++NL W L+ND+  I++LTFS+  D+EK       E    +L PGGR+I VT E K +Y++LV    +   +  Q +AF+ GFNELIP +LV++F+++ELELLI G+ +ID +D K +T
Sbjct: 3335 QLRMRSPQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNDA-TFQPNPNSVYQTEHLSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWLLENDVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEIDFDDLKANT 3573          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.017e-51
Identity = 106/240 (44.17%), Postives = 158/240 (65.83%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSV--DDEKF-----GERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            ++  +S  DLK RL ++F GE+G+D GGL+RE++ LLS  +F+    LF    +D  T Q NP+S    EHL+YFKF+GR+V  A+F  + LD +F  +FYK +L  KV+  D+E VD D ++NL W L+ND+  I++LTFS+  D+EK       E    +L PGGR+I VT E K +Y++LV +  +   +  Q +AF+ G NELIP +LV++F+++ELELLI G+ +ID +D K +T
Sbjct: 3312 QLRMRSPQDLKGRLNVQFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNDA-TFQPNPNSVYQTEHLSYFKFVGRMVAKALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWLLENDVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEIDFDDLKANT 3550          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HUWE1_RAT (E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 2
Query:   62 EDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            E+G D GGL RE++ ++S EMFNP Y LF  S  D  T  INP S  NP HL+YFKF+GR+V  A++  R L+ +F  +FYK +L K V   DME  D   ++ L + L+ND+  +  +LTFS + ++FG     DL P G +I VT ENK +Y+ LV + ++   + +Q  AF+ GF E+IP  L+++F E+ELELLI G+  ID++D K +T
Sbjct:    1 EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNT 214          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 77/218 (35.32%), Postives = 122/218 (55.96%), Query Frame = 2
Query:   62 EDGLDYGGLSREFFFLLSHEMFNPFYCLF-EYSAHDNYTLQINPHS-GVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAW--TLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGG-IADIDVEDWKEHT 700
            E+G+D GGL++EF   +   +F+  Y LF E  AH  Y    N H+   + E L  ++F+G ++G  I+    +D+ F   F    L       D+  +D +L+  L +    D D++  + L F+V  E+FG R  IDLIP G +I VTNEN+ QYI LV+ + +  R+  Q  AF +GF ++I P  + +F E E+++L+GG    ID++D + HT
Sbjct:  712 EEGIDGGGLTKEFLTSICKTVFDINYGLFSETKAHLLYP---NTHAYAQDVERLRCYEFLGMLIGKCIYEGIQIDAAFASFFVAKWLGHPSYFDDLTSLDPNLYEGLVFLKNYDGDVENDMALNFTVVHEEFGVRNVIDLIPNGSNISVTNENRLQYIHLVSNYYLNARLSRQCRAFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHT 926          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 79/235 (33.62%), Postives = 128/235 (54.47%), Query Frame = 2
Query:   23 SDLKKRLMIKFDGEDGL-----DYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWT--LDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDEREL-ELLIGGIADIDVEDWKEHTR 703
            S LK  + + F  E GL     DYGGLS+EF   ++   F   Y LF  +   +  L  +P +      +   +F+GR+VG A++    LD  F   F + +L +   + ++ G+D +L+RNL +    D D+  +  L F+V +E  G+   I+L PGG+D  VTNENK QYI  + ++K+ +++    +AF  G  +LI P  + +F+  E  +LL GG  DIDV+D + +T+
Sbjct:  796 SRLKSSIHVSFVNESGLPEAGLDYGGLSKEFLTDITKAAFATEYGLFSQTPTSDRLLVPSPSARHLENGIQMIEFLGRIVGKALYEGILLDYSFSHVFIQKLLGRYSFIDELSGLDPELYRNLMYVKHYDGDLKELC-LDFTVTEEFCGKMSIIELKPGGKDTSVTNENKMQYIHAMADYKLNRQIVPFSNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTK 1029          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 76/237 (32.07%), Postives = 137/237 (57.81%), Query Frame = 2
Query:   17 SASDLKKRLMIKFDGE-----DGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSG-VNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWT--LDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIAD-IDVEDWKEHT 700
            S  DL+  + + F  E      G+D GG+ ++F   ++   F+  Y LF+ +A  ++ L  NP SG ++ +HL +F F+G ++  A+F    +D  F   F   + +K   L D+  +D +L+R+L +      DI  + EL F + + ++GER   +L+PGG+D+ VTNEN   +I LV+  ++  ++ +Q   F+ GF +LIP + +++F+E EL++LI G  D +D++D + +T
Sbjct:  688 SEDDLRSSIRVTFVNELGVEEAGIDGGGIFKDFMEKITRAAFDVQYGLFKETA--DHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDL-ELYFVILNNEYGERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNT 921          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 80/236 (33.90%), Postives = 131/236 (55.51%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTL--DNDIDGIVELTFSVDD-EKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELI-PPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            I  ++ +DLKK+L ++F+GE G+D GG+S+EFF L+  E+FNP   +F Y          NP S    E    F  IG V+GLAI++   LD  F    Y+ ++ KK + +D+      L+++L   L  + +++  + +TF +   + FG     DL   G  IP+TNEN+ +++ L +++ + K VE+QF AF  GF+ +     L  +F   E+ELLI G  ++D +  +E T
Sbjct:  543 IAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYD-ESTKLFWFNPSSF---ETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETT 774          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 75/241 (31.12%), Postives = 137/241 (56.85%), Query Frame = 2
Query:   17 SASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNY--FKFIGRVVGLAIF-------HRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRN-LAWTLDNDIDGIVELTFSVDDEKFGER----RTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEH 697
            S SD  K   + F  E+ LD+GG  RE+F L+   +F+    LF   + +N  L ++P+    P HL    ++F GR+VG  ++       +++ + + F  +F   ++  ++  +  E  D + +++ + + L+ND+  + EL F+  +EK+ +     + ++L+ GG   PVTN NK  Y+ L+ ++++  +V+E+ + F+ G NEL+P +L+ +FDE ELELL+ G  DI V D+K H
Sbjct:  483 SISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNNQAL-VHPNPN-RPAHLRLKMYEFAGRLVGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEM-ELVFA--EEKYNKSGQLDKVVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDISVSDFKAH 718          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UPL5_ARATH (E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 80/245 (32.65%), Postives = 129/245 (52.65%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGI-----VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNEL----IPPDLVNVFDERELE----LLIGGIADIDVEDWKEHT 700
            I+  S   L   L ++F  E+    G L RE+F+L+  E+FNP   LF  SA D      NP S V+P H ++F+F GRV+ LA+ H+  +   F   F+  +   K+SL+D++  D  ++ +    L+ D +       + LTF ++ E+ G+R TI+L P G+   V ++N+ QY++L+ E +    + EQ   F  GF ++    +PP   + F    LE    +L GG   I ++DWK HT
Sbjct:  528 IVGASPEALHGGLFMEFKNEEATGPGVL-REWFYLVCQEIFNPKNTLFLRSADDFRRFSPNPASKVDPLHPDFFEFTGRVIALALMHKVQVGVLFDRVFFLQLAGLKISLEDIKDTDRIMYNSCKQILEMDPEFFDSNAGLGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLIERRFATPILEQVKQFSRGFTDMLSHSVPPR--SFFKRLYLEDLDGMLRGGENPISIDDWKAHT 769          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 75/241 (31.12%), Postives = 136/241 (56.43%), Query Frame = 2
Query:   17 SASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNY--FKFIGRVVGLAIF-------HRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRN-LAWTLDNDIDGIVELTFSVDDEKFGER----RTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEH 697
            S SD  K   + F  E+ LD+GG  RE+F L+   +F+    LF      N  L ++P+    P HL    ++F GR+VG  ++       +++ + + F  +F   ++  ++  +  E  D + +++ + + L+ND+  + EL F+  +EK+ +     + ++L+ GG   PVTN NK  Y+ L+ ++++  +V+E+ + F+ G NEL+P +L+ +FDE ELELL+ G  DI+V D+K H
Sbjct:  483 SISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTSQLFARFTDSNQAL-VHPNPN-RPAHLRLKMYEFAGRLVGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEM-ELVFA--EEKYNKSGQLDKIVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDINVSDFKAH 718          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
UPL1_ARATH2.941e-5144.58E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
UPL2_ARATH5.017e-5144.17E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
HUWE1_RAT4.696e-4944.39E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Ra... [more]
YFK7_SCHPO3.164e-2935.32Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]
UPL7_ARATH7.050e-2933.62E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
UPL6_ARATH2.051e-2832.07E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_HUMAN4.569e-2833.90Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
K0317_HUMAN3.868e-2731.12Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 ... [more]
UPL5_ARATH5.052e-2732.65E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis th... [more]
K0317_MOUSE6.598e-2731.12Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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