FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 75/235 (31.91%), Postives = 124/235 (52.77%), Query Frame = 2
Query:    2 EIMRQSAS-DLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVE---LTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKE 694
            E++R++ + D KK L + F GED +D GG+ +EFF L+  E+ +P Y +F Y             S    E  + F  IG + GLAI++   +D  F  A YK +L+KK SL D++ +  D+ R++   LD   D I E   L F++  E FG     +L+  G D  V  +N+ ++++   ++   K V   FDAF +GF+++    ++ +F   EL+ ++ G  +    DWKE
Sbjct:  724 EVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIW----FSDKTFEDSDLFHLIGVICGLAIYNCTIVDLHFPLALYKKLLKKKPSLDDLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNY---DWKE 951          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.920e-26
Identity = 73/221 (33.03%), Postives = 124/221 (56.11%), Query Frame = 2
Query:   62 EDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKK-----VSLQDMEGVDEDLHRNLAWT--LDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGG-IADIDVEDWKEHT 700
            E G+D  G+ +EF   +   +F+P   LF+ ++ D   L  +P S ++  +L  F+F+G+++G A++    +D  F   F   +L         S+ ++  +D + ++NL      D DI  +  LT S D++  G+    +LIPGG+ IPVTNENK  YI L+  +++  +++ Q  A +SGF  +I P+ + +F   EL+ LI G  A+ID+ED K+HT
Sbjct:  722 EAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDE-RLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQLLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYDGDITDL-GLTLSYDEDVMGQLVCHELIPGGKTIPVTNENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHT 940          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.920e-26
Identity = 74/235 (31.49%), Postives = 124/235 (52.77%), Query Frame = 2
Query:    2 EIMRQSAS-DLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVE---LTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKE 694
            E++R++ + D KK L + F GED +D GG+ +EFF L+  E+ +P Y +F Y             S    E  + F  IG + GLAI++   +D  F  A YK +L++K SL D++ +  D+ R++   LD   D I E   L F++  E FG     +L+  G D  V  +N+ ++++   ++   K V   FDAF +GF+++    ++ +F   EL+ ++ G  +    DWKE
Sbjct:  724 EVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIW----FSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNY---DWKE 951          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 75/246 (30.49%), Postives = 136/246 (55.28%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDG-----EDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSL-----QDMEGVDEDLHRNLAWT--LDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGG-IADIDVEDWKEHT 700
            ++ + S + +K  + +KF       E G+D  G+ +EF   +   +F+P   LF+ ++  +  L  +P S ++  +L  F+F+G+++G A++    +D  F   F   +L    S+      ++  +D + ++NL      D DI  +  LT S D++  G+    +L+PGG+ IPVTNENK  YI L+  +++  +++ Q  AF+SGF  +I P+ + +F   EL+ LI G  A+ID++D K+HT
Sbjct:  701 QLRQLSQNAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSSGD-RLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQLLGHHHSIFYSSVDELPSLDSEFYKNLTSIKRYDGDISDL-GLTLSYDEDVMGQLVCHELVPGGKSIPVTNENKISYIHLMAHFRMHTQIKNQTVAFISGFRSIIRPEWIRMFSAPELQRLISGDNAEIDLDDLKKHT 944          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 77/250 (30.80%), Postives = 132/250 (52.80%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDME---GVDEDLHRNLAWTLDNDIDGIVEL-------------TFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            E+ R+ A DLKK+L + F GE GLD GGL++E+F LL  ++F+P Y +F Y    +     +  S    ++ + F+ +G ++GLA+++   LD  F    YK +L   V   D     G+      +L   +     G+ EL             TF V  E+FG  ++ +L PGG  IPVTN+N+ +Y++L T++ + K + +QF AF  GF+ +   + + +    E+E+L+ G  ++D+   +  T+
Sbjct:  431 ELTRKRA-DLKKKLKVTFVGEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSH----CHWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPVVPSDQSTPVGICSVTIDDLCQVMPELAHGLKELLSYEGNVEEDFYSTFQVFQEEFGVIKSYNLKPGGDKIPVTNQNRREYVQLYTDFLLNKSIYKQFAAFYCGFHSVCASNALMLLRPEEVEILVCGSPELDMHALQRSTQ 675          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 72/221 (32.58%), Postives = 124/221 (56.11%), Query Frame = 2
Query:   62 EDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKK-----VSLQDMEGVDEDLHRNLAWT--LDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGG-IADIDVEDWKEHT 700
            E G+D  G+ +EF   +   +F+P   LF+ ++ D   L  +P S ++  +L  F+F+G+++G A++    +D  F   F   ML         S+ ++  +D + ++NL      D DI  +  LT S D++  G+    +L+PGG+ IPVT+ENK  YI L+  +++  +++ Q  A +SGF  +I P+ + +F   EL+ LI G  A+ID+ED K+HT
Sbjct:  724 EAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDE-RLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQMLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYDGDIADL-GLTLSYDEDVMGQLVCHELVPGGKTIPVTDENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHT 942          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 76/234 (32.48%), Postives = 124/234 (52.99%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLD---NDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKE 694
            E+   S  DLKK L + FDGE+ +D GG+++EFF LL  E+ NP Y +F Y   D+  L  +    V  EH N+F  IG   GLAI++   +D  F  A YK +L  K  L+D++ +     R+L   LD    D++    L F++  E +G      LIPGG ++ V  +N+ ++++    +     V E + AF SGF ++    ++ +F   EL  ++ G ++ + E+ +E
Sbjct:  718 ELSIHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTY-YQDSNLLWFSDTCFV--EH-NWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEE 947          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 78/252 (30.95%), Postives = 136/252 (53.97%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRK--------------KVSLQDMEGVDEDLHRNLAWTLDNDIDGIVE----LTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            E+ R+ A DLKK+L + F GE GLD GGL++E+F LL  ++F+P Y +F Y    +     +  S    ++ + F+ +G ++GLA+++   LD  F    YK +L                 V++ D+  +  +L   L+  L ++  G VE     TF V  E+FG  ++ +L PGG  I VTN+N+ +Y++L T++ + K + +QF AF  GF+ +   + + +    E+E+L+ G  D+D+   +  T+
Sbjct:  433 ELTRKRA-DLKKKLKVTFVGEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSH----CHWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQNIPVGICSVTVDDLCQIMPELAHGLSELLSHE--GNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQ 677          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 78/252 (30.95%), Postives = 136/252 (53.97%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRK--------------KVSLQDMEGVDEDLHRNLAWTLDNDIDGIVE----LTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            E+ R+ A DLKK+L + F GE GLD GGL++E+F LL  ++F+P Y +F Y    +     +  S    ++ + F+ +G ++GLA+++   LD  F    YK +L                 V++ D+  +  +L   L+  L ++  G VE     TF V  E+FG  ++ +L PGG  I VTN+N+ +Y++L T++ + K + +QF AF  GF+ +   + + +    E+E+L+ G  D+D+   +  T+
Sbjct:  433 ELTRKRA-DLKKKLKVTFVGEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSH----CHWFSSFKCDNYSEFRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQNIPVGICNVTVDDLCQIMPELAHGLSELLSHE--GNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQ 677          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 78/236 (33.05%), Postives = 129/236 (54.66%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTL--DNDIDGIVELTFSVDD-EKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELI-PPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            I  ++ +DLKK+L ++F+GE G+D GG+S+EFF L+  E+FNP   +F Y          NP S    E    F  IG ++GLAI++   LD  F    Y+ ++ KK + +D+      L+++L   L  +  ++  + +TF +   + FG     DL   G  IP+TNEN+ +++   +++ + K VE+QF AF  GF+ +     L  +F   E+ELLI G  ++D +  +E T
Sbjct:  554 IAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYD-EATKLFWFNPSSF---ETEGQFTLIG-ILGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGSVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETT 784          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
HERC4_HUMAN8.617e-2731.91Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
UBE3B_HUMAN1.920e-2633.03Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
HERC4_RAT1.920e-2631.49Probable E3 ubiquitin-protein ligase HERC4 OS=Ratt... [more]
UBE3B_XENTR2.507e-2630.49Ubiquitin-protein ligase E3B OS=Xenopus tropicalis... [more]
HECD2_MOUSE2.507e-2630.80Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
UBE3B_MOUSE5.586e-2632.58Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
HERC3_HUMAN5.586e-2632.48Probable E3 ubiquitin-protein ligase HERC3 OS=Homo... [more]
HECD2_PONAB9.528e-2630.95Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_HUMAN9.528e-2630.95Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
UBE3A_MOUSE1.625e-2533.05Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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