FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 73/235 (31.06%), Postives = 123/235 (52.34%), Query Frame = 2
Query:    2 EIMRQSAS-DLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVE---LTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKE 694
            E++R++ + D KK L + F GED +D GG+ +EFF L+  E+ +P Y +F Y             S    E  + F  IG + GLAI++   +D  F  A YK +L++K SL D++ +   + R++   LD   D I E   L F++  E FG     +L+  G D  V  +N+ ++++   ++   K V   FDAF +GF+++    ++ +F   EL+ ++ G  +    DWKE
Sbjct:  724 EVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIW----FSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPAVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNRQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNY---DWKE 951          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: MUG30_SCHPO (Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces pombe GN=mug30 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 67/224 (29.91%), Postives = 121/224 (54.02%), Query Frame = 2
Query:   26 DLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTL--DNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWK 691
            D +K L ++F GE+G+D GGL RE+  LL+ ++F+P + LF      +  L  N       + ++Y+   G ++G+AI +   LD     AFYK +L+  +S  D++     L+R L   L  + D+     L F+++ +     RT++L  GG ++ V NEN+ +Y+    ++ +   V++QF AF  GF ++   + +++F + E+  LI G    +V DW+
Sbjct:  456 DFRKALKVEFLGEEGIDAGGLKREWLLLLTRKVFSPEFGLFVNCEESSNYLWFNYSH--RSKEIDYYHMSGILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYRGLKELLLFEGDVKNTYGLNFTINLKAVEGFRTVELKEGGSELSVDNENRKEYVLRYVDYLLNTTVKKQFSAFFDGFMKVCGGNAISLFQDNEISKLIRG--SEEVIDWE 675          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 77/248 (31.05%), Postives = 127/248 (51.21%), Query Frame = 2
Query:    8 MRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYT-LQINP-----HSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTL---DNDIDGIVELTFSV----------DDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPP-DLVNVFDERELELLIGGIADIDVEDWK 691
            +++   DL K L I+F  E G+D GGL +E+FFLL+  +FNP   LF Y    + +   I+P       G N +   Y+ F G V+GLAIF+   LD  F  A YK +  + +S +D   +  +  RNL   L   +++ + +  LTF            D +   E  T++L   GR++P+T  NK +++    E+ + K +E Q++ F+SGF  +    + + +F+  ELE L+ G  +    D+K
Sbjct:  538 IKEHQGDLLKSLRIEFVNEPGIDAGGLRKEWFFLLTKSLFNPMNGLFIYIKESSRSWFAIDPPNFDKSKGKNSQLELYYLF-GVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFPETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPITQSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFK 784          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC5_HUMAN (Probable E3 ubiquitin-protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 69/227 (30.40%), Postives = 112/227 (49.34%), Query Frame = 2
Query:   26 DLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEY-SAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            DL+K L + F GE G D GG+ +EFF+ L  EM  P Y +F Y          + P      E   YF F G + GL++F+    +  F  A +K +L +  SL+D++ +  DL +NL   LD++ D   E+ F +      +R   +LIP G  I V   NK  Y+     +     V+  ++ F  GF ++   D++ +F   EL+ +I G  D D + ++++ R
Sbjct:  705 DLRKELWVSFSGEIGYDLGGVKKEFFYCLFAEMIQPEYGMFMYPEGASCMWFPVKPKF----EKKRYF-FFGVLCGLSLFNCNVANLPFPLALFKKLLDQMPSLEDLKELSPDLGKNLQTLLDDEGDNFEEV-FYIHFNVHWDRNDTNLIPNGSSITVNQTNKRDYVSKYINYIFNDSVKAVYEEFRRGFYKMCDEDIIKLFHPEELKDVIVGNTDYDWKTFEKNAR 925          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HUL5_YEAST (Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 74/225 (32.89%), Postives = 116/225 (51.56%), Query Frame = 2
Query:   50 KFDGEDGLDYGGLSREFFFLLSHEMF-NPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKK----VSLQDMEGVDEDLHRNLAWTLDNDIDGI--VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIAD-IDVEDWKEHT 700
            +F  E G+D GG+++EF   +S E F +P + LF    +D Y L   P    +   L Y  F+G+VVG  ++    +D  F   F K +L        S  D+   D  L+ NL   L+   D I  ++LTF +D+ +    + +DLIP G    VT +N   Y+  VT++K+ KR  +   AF  G + +I P  + +F+  EL++LI G  D ID++D K +T
Sbjct:  589 EFGEEAGIDGGGITKEFLTTVSDEGFKDPKHELFR--TNDRYELY--PSVVYDATKLKYIWFLGKVVGKCLYEHVLIDVSFADFFLKKLLNYSNGFLSSFSDLGSYDSVLYNNLIKLLNMTTDEIKSLDLTFEIDEPE-SSAKVVDLIPNGSKTYVTKDNVLLYVTKVTDYKLNKRCFKPVSAFHGGLSVIIAPHWMEMFNSIELQMLISGERDNIDLDDLKSNT 808          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21
Identity = 69/241 (28.63%), Postives = 126/241 (52.28%), Query Frame = 2
Query:   14 QSASDLKKRLMIKFDG-----EDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSG--VNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKK--VSLQDMEGVDEDLHRNLAW--TLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGI-ADIDVEDWKEHT 700
            ++  DLKKR+ +         E G+D GG+ REF   L    FNP    F+ +  +   L  NP +   V      ++ F+GR++G A++    ++  F G F   +L     V +  +  +D +++RNL +  + + D++ +  L F+V +   GE + ++L  GG+DIPVT  N+  YI LV ++++ K++     AF  G   ++  + + +FD++E+++LI G    + +ED K  T
Sbjct:  743 ENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTT--NEGLLYPNPAAQMLVGDSFARHYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDIHHLASLDPEVYRNLLFLKSYEEDVEEL-GLNFTVVNNDLGEAQVVELKFGGKDIPVTGANRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFT 980          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.429e-21
Identity = 68/241 (28.22%), Postives = 129/241 (53.53%), Query Frame = 2
Query:   14 QSASDLKKRLMIKFDG-----EDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSG--VNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKK--VSLQDMEGVDEDLHRNLAW--TLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGI-ADIDVEDWKEHT 700
            ++  DLKKR+ +         E G+D GG+ REF   L    FNP    F+ +  +   L  NP +   V      ++ F+GR++G A++    ++  F G F   +L     V +  +  +D ++++NL +  + ++D++ +  L F+V +   GE + ++L  GG+DIPVT+ N+  YI LV ++++ +++ +   AF  G   ++  + + +FD++E+++LI G    I +ED K  T
Sbjct:  743 ENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTT--NEGLLYPNPAAQMLVGDSFARHYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDIHHLASLDPEVYKNLLFLKSYEDDVEEL-GLNFTVVNNDLGEAQVVELKFGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFT 980          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 76/252 (30.16%), Postives = 121/252 (48.02%), Query Frame = 2
Query:    8 MRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEY---------SAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLD---NDIDGIVELTFSV------DDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIAD--IDVEDWKEHTR 703
            ++    DLKK L I+F  E G+D GGL +E+F LL+ ++FNP   LF Y         S  ++   ++    G + E    +   G V+GLAI++   LD  F  AFYK +  + +S+ D   +  +   N+   L+    D + I  LTF        D+ K   R+   L P G    VT ENK +Y  L  ++ + + +   F++F +GF  +I  +   +F   ELE L+ G  +  +DV   +  TR
Sbjct:  494 IQNQQKDLKKSLRIEFVNEPGIDAGGLRKEWFLLLTRDLFNPNNGLFVYVPESRLCWFSIMESIEHELLQGEGSSSE---LYYLFGVVLGLAIYNSTILDLKFPRAFYKKICGEVLSVNDFLELYPETGTNMLKMLEYDGEDFEDIFALTFETCFPDRFDESKIHYRQ---LCPDGSTQAVTRENKHEYFRLWMDFYLNRSIAPGFESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTR 739          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 67/238 (28.15%), Postives = 116/238 (48.74%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYT-LQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVE---LTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            ++ +  A+D  K L+++F  E   + GG+S EFF  +  EM  P Y +F Y    +       P     PE   YF F G + GL++F+    +  F  A YK +L +K SL+D++ +   L ++L   LD+  D I +   + FS+      ++  +DLIP G  IPV   NK  Y+    ++     V+  ++ F  GF  +   +++  F   EL   I G  D D + ++++++
Sbjct:  688 QLSQAEATDFCKVLVVEFINEICPESGGVSSEFFHCMFEEMTKPEYGMFMYPEMGSCMWFPAKP----KPEKKRYFLF-GMLCGLSLFNLNVANLPFPLALYKKLLDQKPSLEDLKELSPRLGKSLQEVLDDAADDIGDALCIRFSIH----WDQNDVDLIPNGISIPVDQTNKRDYVSKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTDYDWKQFEQNSK 916          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HYD_DROME (E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 50/174 (28.74%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  209 EHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDN-------DIDGIVELTFSVD---DEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            E +N F+ IGR++GL +     L  F      K +L +K+   D+   D  L+ +    + N       +    +EL F +D   +E  G R   +LIPGGRD+ VT+ N  +Y+   TE++++K  E+  +A   G  +++P + +      +L LL+ G+ DI+V     +T
Sbjct: 2610 ERINAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILGRKIKFHDLAFFDPALYESFRQIIQNAQTKEGEETINRMELCFVIDLMKEEGCGNR---ELIPGGRDVAVTSSNIFEYVRRYTEYRLIKSQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYT 2780          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
HERC4_MOUSE1.625e-2531.06Probable E3 ubiquitin-protein ligase HERC4 OS=Mus ... [more]
MUG30_SCHPO1.376e-2429.91Probable E3 ubiquitin-protein ligase mug30 OS=Schi... [more]
HUL4_YEAST3.065e-2431.05Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
HERC5_HUMAN3.747e-2230.40Probable E3 ubiquitin-protein ligase HERC5 OS=Homo... [more]
HUL5_YEAST8.347e-2232.89Probable E3 ubiquitin-protein ligase HUL5 OS=Sacch... [more]
UBE3C_MOUSE2.429e-2128.63Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ub... [more]
UBE3C_HUMAN2.429e-2128.22Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
HUL4_ASHGO1.333e-1930.16Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
HERC6_HUMAN9.550e-1828.15Probable E3 ubiquitin-protein ligase HERC6 OS=Homo... [more]
HYD_DROME5.794e-1528.74E3 ubiquitin-protein ligase hyd OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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