FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 66/252 (26.19%), Postives = 126/252 (50.00%), Query Frame = 2
Query:    2 EIMRQSASDLK---KRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQI---------NPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTF--SVDDEKF----GERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            ++++ +ASDL+   +   +K  GE   D GG+  +    +  E+      L   S   N T ++         NP + ++ EHL  FKF+G ++G+AI  ++ LD       +K +    ++L+D+E VD    + L   L  +  GI E +F   +  + F     + + + +IPGG  IP+T  N+ +Y+E   E++ +  ++ Q  A   G + ++P  L+++   ++LE ++ G+ +I VE  K+  R
Sbjct: 4496 QVVKLNASDLRLPSRAWKVKLVGEGADDAGGVFDDTITEMCQELETGIVDLLIPSP--NATAEVGYNRDRFLFNPSACLD-EHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQTLNSILHIEDSGITEESFHEMIPLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYR-LHEMDRQVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVR 4743          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBR5_RAT (E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rattus norvegicus GN=Ubr5 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 46/173 (26.59%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  188 PHSGVNPE-HLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVD----EDLHRNLAWTLDNDIDGI---VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVE 682
            P  G N E  LN F+ IGR++GL +               K++L +KV+  D    D    E L + +  +  +D D +   ++L F+VD  K      ++LIP G +IPVT +N  +Y+    E +++   E+   A   G  +++P + +      +  LL+ G  +++V+
Sbjct:  637 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQ 809          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBR5_MOUSE (E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  188 PHSGVNPE-HLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVD----EDLHRNLAWTLDNDIDGI---VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVE 682
            P  G N E  LN F+ IGR++GL +               K++L +KV+  D    D    E L + +  +  +D D +   ++L F++D  K      ++LIP G +IPVT +N  +Y+    E +++   E+   A   G  +++P + +      +  LL+ G  +++V+
Sbjct: 2509 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQ 2681          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBR5_HUMAN (E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  188 PHSGVNPE-HLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVD----EDLHRNLAWTLDNDIDGI---VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVE 682
            P  G N E  LN F+ IGR++GL +               K++L +KV+  D    D    E L + +  +  +D D +   ++L F++D  K      ++LIP G +IPVT +N  +Y+    E +++   E+   A   G  +++P + +      +  LL+ G  +++V+
Sbjct: 2516 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQ 2688          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
HERC1_HUMAN9.883e-1526.19Probable E3 ubiquitin-protein ligase HERC1 OS=Homo... [more]
UBR5_RAT2.976e-1126.59E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rat... [more]
UBR5_MOUSE3.886e-1126.01E3 ubiquitin-protein ligase UBR5 OS=Mus musculus G... [more]
UBR5_HUMAN3.886e-1126.01E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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