FC931696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: HERC1_HUMAN (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15 Identity = 66/252 (26.19%), Postives = 126/252 (50.00%), Query Frame = 2 Query: 2 EIMRQSASDLK---KRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQI---------NPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTF--SVDDEKF----GERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703 ++++ +ASDL+ + +K GE D GG+ + + E+ L S N T ++ NP + ++ EHL FKF+G ++G+AI ++ LD +K + ++L+D+E VD + L L + GI E +F + + F + + + +IPGG IP+T N+ +Y+E E++ + ++ Q A G + ++P L+++ ++LE ++ G+ +I VE K+ R Sbjct: 4496 QVVKLNASDLRLPSRAWKVKLVGEGADDAGGVFDDTITEMCQELETGIVDLLIPSP--NATAEVGYNRDRFLFNPSACLD-EHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQTLNSILHIEDSGITEESFHEMIPLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYR-LHEMDRQVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVR 4743
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBR5_RAT (E3 ubiquitin-protein ligase UBR5 (Fragment) OS=Rattus norvegicus GN=Ubr5 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11 Identity = 46/173 (26.59%), Postives = 83/173 (47.98%), Query Frame = 2 Query: 188 PHSGVNPE-HLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVD----EDLHRNLAWTLDNDIDGI---VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVE 682 P G N E LN F+ IGR++GL + K++L +KV+ D D E L + + + +D D + ++L F+VD K ++LIP G +IPVT +N +Y+ E +++ E+ A G +++P + + + LL+ G +++V+ Sbjct: 637 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAVDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQ 809
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBR5_MOUSE (E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11 Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 2 Query: 188 PHSGVNPE-HLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVD----EDLHRNLAWTLDNDIDGI---VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVE 682 P G N E LN F+ IGR++GL + K++L +KV+ D D E L + + + +D D + ++L F++D K ++LIP G +IPVT +N +Y+ E +++ E+ A G +++P + + + LL+ G +++V+ Sbjct: 2509 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQ 2681
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: UBR5_HUMAN (E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11 Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 2 Query: 188 PHSGVNPE-HLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVD----EDLHRNLAWTLDNDIDGI---VELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVE 682 P G N E LN F+ IGR++GL + K++L +KV+ D D E L + + + +D D + ++L F++D K ++LIP G +IPVT +N +Y+ E +++ E+ A G +++P + + + LL+ G +++V+ Sbjct: 2516 PRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQ 2688 The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bpback to top |