FC931699

Overview
NameFC931699
Unique NameFC931699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: A1AT1_MOUSE (Alpha-1-antitrypsin 1-1 OS=Mus musculus GN=Serpina1a PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.051e-19
Identity = 64/211 (30.33%), Postives = 106/211 (50.24%), Query Frame = 3
Query:    9 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 629
            QS    E  +N  D A+SL + + + ++  SN+ FSP SI    +++S GSKG T  Q+L  L+      S+  ++     L+  +     P    +LS  NG++++  L L   F +   N Y+A    V+F  ++ E  + +N + EK T G + E +    +D  T    AN + FKG W + FD   T++ +FH+    ++KVP MT
Sbjct:   37 QSPASHEIATNLGDFAISLYREL-VHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGLQFNLTQTSEADIHKSFQHLLQTL---NRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF-AESEEAKKVINDFVEKGTQGKIAEAVK--KLDQDTVFALANYILFKGKWKKPFDPENTEEAEFHVDESTTVKVPMMT 240          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: SPB10_RHIFE (Serpin B10 OS=Rhinolophus ferrumequinum GN=SERPINB10 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 56/214 (26.17%), Postives = 96/214 (44.86%), Query Frame = 3
Query:   54 ALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFA-------------------SELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 638
            AL  +K +A   A+  N+ FSP  I   L+++  G++G T  Q+   L+   D     F                    S+   ++    +PS    L  ANG++ +K+    N + + +   +      V+F     +   E+N W E +T G +  +LP  +VD++TR++  NA+YFKG W   F +  T++  F +    S  V  M+ KK
Sbjct:   12 ALEFSKKLA-ESAEGKNIFFSPWGISTSLAMVYLGTRGTTAAQIAQVLQFNRDQDSKFFPESEKKRKMDFNSRKVEEIRSDFQTLISEINNPSNAYVLKTANGIYGEKTYPFHNKYLEDMKTYFGVEPQSVNFLEAPDQTRNEINSWVESQTQGKILNLLPDDAVDSATRMVLVNAIYFKGIWEHQFSARDTREKPFRINKNTSKPVQMMSMKK 224          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: A1AT_RAT (Alpha-1-antiproteinase OS=Rattus norvegicus GN=Serpina1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 62/210 (29.52%), Postives = 106/210 (50.48%), Query Frame = 3
Query:    9 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSK----SDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFM 626
            QS   R+  SN  D A SL + + + ++  SN+ FSP SI    +++S GSKG T  Q+L  L+       +  ++     L+  +     P    +L+  NG++++K+L L   F + V N Y + +  V+F   + E  + +N + EK T G + +++    +D  T     N ++FKG W   F+   T+D DFH+    ++KVP M
Sbjct:   37 QSPTYRKISSNLADFAFSLYREL-VHQSNTSNIFFSPMSITTAFAMLSLGSKGDTRKQILEGLEFNLTQIPEADIHKAFHHLLQTL---NRPDSELQLNTGNGLFVNKNLKLVEKFLEEVKNNYHSEAFSVNF-ADSEEAKKVINDYVEKGTQGKIVDLMK--QLDEDTVFALVNYIFFKGKWKRPFNPEHTRDADFHVDKSTTVKVPMM 239          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: A1AT3_MOUSE (Alpha-1-antitrypsin 1-3 OS=Mus musculus GN=Serpina1c PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 64/211 (30.33%), Postives = 106/211 (50.24%), Query Frame = 3
Query:    9 QSMDVRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK----SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMT 629
            QS    E  +N  D A+SL + + + ++  SN+ FSP SI    +++S GSKG T  Q+L  L+      S+  ++     L+  +     P    +LS  NG++++  L L   F +   N Y+A    V+F  ++ E  + +N + EK T G + E +    +D  T    AN + FKG W + FD   T++ +FH+    ++KVP MT
Sbjct:   37 QSPASHEIATNLGDFAISLYREL-VHQSNTSNIFFSPVSIATAFAMLSLGSKGDTHTQILEGLQFNLTQTSEADIHKSFQHLLQTL---NRPDSELQLSTGNGLFVNNDLKLVEKFLEEAKNHYQAEVFSVNF-AESEEAKKVINDFVEKGTQGKIVEAVK--KLDQDTVFALANYILFKGKWKKPFDPENTEEAEFHVDESTTVKVPMMT 240          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: PAI1_MUSVI (Plasminogen activator inhibitor 1 OS=Mustela vison GN=SERPINE1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.499e-19
Identity = 62/209 (29.67%), Postives = 105/209 (50.24%), Query Frame = 3
Query:   45 TDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQ-----LNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSRE---VNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQF 647
            TD  + + K VA   +KD N+VFSP  +  +L+++   + G T  Q+   ++ + D++     L     EL+        P     +S A+ +++ + L L + F      +++    QVDF    +EV R    +N W ++ T G++ ++L  G+VD  TRL+  NALYF G W   F  S T    FH  +G ++ VP M ++ N+F
Sbjct:   34 TDFGVKVFKQVAQA-SKDRNMVFSPYGLASVLAMLQLTTAGETRQQIQEAMRFQIDEKGMAPALRQLYKELMG-------PWNKDEISTADAIFVQRDLKLVHGFMPYFFRLFQTTVKQVDF----SEVERARFIINDWVKRHTKGMIGDLLGRGTVDQLTRLMLVNALYFNGQWKTPFPKSGTHHRLFHKSDGSTVSVPMM-AQTNKF 229          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: Y2613_METAC (Uncharacterized serpin-like protein MA_2613/MA_2612 OS=Methanosarcina acetivorans GN=MA_2613/MA_2612 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 53/192 (27.60%), Postives = 91/192 (47.40%), Query Frame = 3
Query:   66 TKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKN 641
            +K V L   + +N++FSP S+   +++   G++G   +Q+ +     +++ +  F   L        S S G  L  AN +W+ +   +K  +   V N Y++    +DF  K  E    +N W E +T+  +K+++P GS+ + TRLI  NA+YF G W   FD   T    F+      + V  M    N
Sbjct:   51 SKLVQLESREKNNILFSPYSVSAAMAICYEGTEGTAKEQISNVFYFPANNTV--FKVRLKETNDKVYSGSDGYELENANAIWVQEEYPVKEEYIFNVKNYYRSEVTNLDFVEKPDESRDAINEWVEDKTDRKIKDIVPKGSITDDTRLILTNAIYFNGKWEHEFDKKMTSKKTFYPTKREEVSVDMMYISSN 240          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: SPB10_OTOGA (Serpin B10 OS=Otolemur garnettii GN=SERPINB10 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 62/224 (27.68%), Postives = 104/224 (46.43%), Query Frame = 3
Query:   36 SNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDD--------------QLNTFASELVAVVFADG-----SPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFV 650
            S+ +  AL  +K +A + A   N+ FSP SI   L+++  G++G T  ++   L+   D               + N   +E +   F         P+    L  ANG++ +K+    N + + V   + A    V+F   + ++ +E+N W E +T G +  +LP  SVD++TR+I  NALYFKG W   F +  T +  F +    S  V  M+ K+   V
Sbjct:    6 SSISQFALEFSKELAASAA-GKNIFFSPWSISSALAMVYLGARGTTAVEMAKVLQLNRDQADKTGPESEKKRKMEFNLGKAEEIHCDFQTLISEILKPTDAHVLKTANGIYGEKTYPFHNKYLEEVKTYFGAEPQSVNFVEASDQIRKEINSWVESQTQGKILNLLPDDSVDSTTRMILVNALYFKGTWEHQFLAQNTTEKPFRINETTSKPVQMMSMKEKLHV 228          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: NEUS_HUMAN (Neuroserpin OS=Homo sapiens GN=SERPINI1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 60/222 (27.03%), Postives = 106/222 (47.75%), Query Frame = 3
Query:    6 LQSMDVRESISNQTDVALSLTKHVAL-TEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQL---LSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKKNQFVSAF 659
            LQSM    +   +    LS+  +  L    +D N++FSP SI + + ++  G++G T  ++   + +   K+ ++ + F  E   +V A  S      + +AN +++     +   F Q++   + AA N VDF    A V+  +N W E  TN LVK+++ P   D +T L   NA+YFKG W   F    T+ + F   +   +++P M  +   +   F
Sbjct:   12 LQSMATGATFPEEAIADLSVNMYNRLRATGEDENILFSPLSIALAMGMMELGAQGSTQKEIRHSMGYDSLKNGEEFS-FLKEFSNMVTAKESQYV---MKIANSLFVQNGFHVNEEFLQMMKKYFNAAVNHVDFSQNVA-VANYINKWVENNTNNLVKDLVSPRDFDAATYLALINAVYFKGNWKSQFRPENTRTFSFTKDDESEVQIPMMYQQGEFYYGEF 228          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: ILEU_XENLA (Leukocyte elastase inhibitor OS=Xenopus laevis GN=serpinb1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 3
Query:  102 NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 638
            NL FSP S+   L+++  G+KG T +Q+   L   +   L++    L A +  +        L++AN ++ +K+ +    F   V   Y A    VDF +   +  +E+N W  ++T G + EVL  G+VD ST+L+  NA+YFKG W + F++  T D  F L       V  M  K+
Sbjct:   27 NLFFSPISLSTALAMVFLGTKGKTAEQMSKTLHFDAVKDLHSNFQTLNAEI--NKKDVSTYALNLANRLFGEKTFNFLPNFLSSVKKQYSADLGTVDFISALEDARKEINKWVSEQTKGKIPEVLSTGTVDRSTKLVLVNAIYFKGDWAKKFNAEHTTDMPFQLNKKEQKTVKMMYQKE 203          
BLAST of FC931699 vs. ExPASy Swiss-Prot
Match: ILEU_HORSE (Leukocyte elastase inhibitor OS=Equus caballus GN=SERPINB1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 60/188 (31.91%), Postives = 94/188 (50.00%), Query Frame = 3
Query:   78 ALTEAKDS-NLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLKSKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAASNQVDFQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFDSSKTKDYDFHLLNGGSIKVPFMTSKK 638
            AL E+  + N+  SP SI   L++I  G++G T  Q+   L   + + +++    L A +   G+P     L +AN ++ +K+ +    F      +Y A    VDFQ    +  +E+N W + +T G + E+L  G VDN T+L+  NA+YFKG W E F    T+D  F L    +  V  M  KK
Sbjct:   18 ALNESDPTGNIFISPLSISSALAMIFLGTRGNTAAQVSKALYFDTVEDIHSRFQSLNADINKPGAPY---ILKLANRLYGEKTYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINEWVKGQTEGKIPELLVKGMVDNMTKLVLVNAIYFKGNWQEKFMKEATRDAPFRLNKKDTKTVKMMYQKK 202          
The following BLAST results are available for this feature:
BLAST of FC931699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
A1AT1_MOUSE2.051e-1930.33Alpha-1-antitrypsin 1-1 OS=Mus musculus GN=Serpina... [more]
SPB10_RHIFE2.679e-1926.17Serpin B10 OS=Rhinolophus ferrumequinum GN=SERPINB... [more]
A1AT_RAT2.679e-1929.52Alpha-1-antiproteinase OS=Rattus norvegicus GN=Ser... [more]
A1AT3_MOUSE2.679e-1930.33Alpha-1-antitrypsin 1-3 OS=Mus musculus GN=Serpina... [more]
PAI1_MUSVI3.499e-1929.67Plasminogen activator inhibitor 1 OS=Mustela vison... [more]
Y2613_METAC4.570e-1927.60Uncharacterized serpin-like protein MA_2613/MA_261... [more]
SPB10_OTOGA4.570e-1927.68Serpin B10 OS=Otolemur garnettii GN=SERPINB10 PE=3... [more]
NEUS_HUMAN4.570e-1927.03Neuroserpin OS=Homo sapiens GN=SERPINI1 PE=1 SV=1[more]
ILEU_XENLA4.570e-1931.28Leukocyte elastase inhibitor OS=Xenopus laevis GN=... [more]
ILEU_HORSE4.570e-1931.91Leukocyte elastase inhibitor OS=Equus caballus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108A06EF PostHarvP1 Citrus clementina cDNA clone C34108A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931699 ID=FC931699; Name=FC931699; organism=Citrus clementina; type=EST; length=674bp
GTAGTTTGCAGAGCATGGACGTACGCGAATCAATCAGCAACCAAACCGAC
GTCGCTTTGTCTCTAACAAAGCACGTTGCCCTAACCGAAGCTAAAGACTC
GAACCTCGTCTTCTCGCCGTCATCGATCCACGTTCTGCTGAGCCTGATCT
CGGCTGGATCCAAGGGCCCCACTCTCGACCAGTTGCTCTCTTTTCTCAAG
TCCAAATCCGACGACCAACTTAACACCTTCGCCTCCGAACTCGTCGCCGT
CGTTTTTGCCGACGGAAGTCCTAGCGGCGGGCCCCGCTTGTCCGTGGCCA
ATGGTGTTTGGATTGATAAGTCACTTTCTCTCAAGAATACTTTCAAACAG
GTTGTGGACAACGTCTACAAGGCTGCTTCTAATCAAGTCGATTTCCAAAC
CAAGGCTGCTGAAGTATCCAGAGAAGTGAACATGTGGGCTGAGAAGGAGA
CCAATGGCCTTGTTAAAGAGGTTCTTCCTCCTGGTTCAGTTGACAATTCA
ACCAGGCTCATCTTTGCAAATGCACTATACTTCAAAGGAGCTTGGAATGA
AACATTTGATTCATCAAAGACAAAAGACTATGACTTTCACCTTCTCAATG
GAGGCTCCATTAAAGTGCCGTTCATGACTAGCAAGAAGAATCAGTTTGTG
AGTGCCTTTGATGGTTTCAAGTTT
back to top