FC931707

Overview
NameFC931707
Unique NameFC931707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15377 contig Ccv1_Contig15377:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 2
Query:  149 KEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 331
            K+  +RGVR+RPWG++AAEIRDP + +RVWLGTFDT                G KAK NFP
Sbjct:   73 KKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  113 PAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPL 334
            P K    +   VK  H+RGVR+RPWG++AAEIRDP K  +RVWLGTF+T                G++A  NFPL
Sbjct:  101 PKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175          
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.276e-11
Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 2
Query:   44 KHYPLEIKIYYGNNMAPREKASGPAK------VNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPLP 337
            K Y  EI+   G + +      G  K      V  + +  VK   +RGVR+RPWG++AAEIRDP  ++R+WLGTF T                G KA TNF  P
Sbjct:   60 KRYVKEIRFCQGESSSSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTP 163          
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 2
Query:   95 REKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 331
            +E+A+ P K     N       +RG+RKRPWG++AAEIRDP K  RVWLGTF+T                G KAK NFP
Sbjct:   63 KEQATEPGKRRKRKNV------YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  161 FRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 331
            +RG+R+RPWG++AAEIRDP K SR WLGTFDT                G KAK NFP
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFP 184          
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  158 HFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPL 334
            H+RGVR+RPWG++AAEIRDP KK SR+WLGTF++                G KA  NFPL
Sbjct:  106 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPL 165          
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  158 HFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPL 334
            H+RGVR+RPWG++AAEIRDP KK SR+WLGTF++                G KA  NFPL
Sbjct:  109 HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPL 168          
BLAST of FC931707 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 2
Query:   89 APREKASGPAKVNGNSNGIVKEVHFRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 331
            +P    + PA+       + K  H+RGVR+RPWG++AAEIRDP K  +RVWLGT++T                G+KA  NFP
Sbjct:   79 SPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160          
The following BLAST results are available for this feature:
BLAST of FC931707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF110_ARATH3.276e-1152.46Ethylene-responsive transcription factor ERF110 OS... [more]
EF101_ARATH3.276e-1146.67Ethylene-responsive transcription factor 2 OS=Arab... [more]
CRF6_ARATH3.276e-1137.50Ethylene-responsive transcription factor CRF6 OS=A... [more]
RAP23_ARATH5.588e-1145.57Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP22_ARATH5.588e-1154.39Ethylene-responsive transcription factor RAP2-2 OS... [more]
EF107_ARATH5.588e-1153.33Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH5.588e-1153.33Ethylene-responsive transcription factor ERF106 OS... [more]
ERF2_NICSY9.533e-1141.46Ethylene-responsive transcription factor 2 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC34108B02EF PostHarvP1 Citrus clementina cDNA clone C34108B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931707 ID=FC931707; Name=FC931707; organism=Citrus clementina; type=EST; length=751bp
GGTCCCCACTTCCTTTTATGTTTTGTCACTCGCTCAAAACAACAAACACT
ACCCACTTGAAATAAAAATATATTACGGAAATAATATGGCGCCGAGAGAG
AAGGCGTCGGGACCTGCAAAAGTTAACGGAAACAGTAACGGTATTGTTAA
AGAGGTGCATTTTAGGGGCGTTAGAAAGAGGCCGTGGGGTCGATATGCAG
CCGAGATTAGGGATCCCGGCAAGAAGAGCCGTGTTTGGCTTGGAACCTTC
GACACCGCTGAAGAAGCCGCTCGGGCCTACGACGCTGCCGCTAGAGAATT
TCGCGGCGCCAAGGCTAAAACTAACTTCCCCTTGCCTTCTGAAAATGTAA
CCAACAAAATTAGTCACAACAATATCAACATCAACAATAATAACCAGAGC
CCCAGCCAAAGTAGTACCATAGAGTCTTCAAGCCGCGAGCCGGCTCTGAT
GATCGATTCGTCGCCGTTAGATCTCAATCTTGGTCCGGCTTGCGCCGGCG
GTGGTGCCGGTGGAGGATTTAACGCCACCGTTCGGTTTCCCTTCCAGCCT
GTGGGGGGTGCTTTCGGTGCGGCGAACCAGGTGTTTTATTTTGATCCGGT
AGCTGCGATGAAGAGTCAGCAGTATCAACGGCTCAGATTCGACCATCACC
GGAATTATAATTTTCATGCGGCGGCGGTGACGGCGGTCGGTGACGGAAGT
GTGCAGAGCGACTCTGAATCATCATCCATTGTCGATTTGAACCATCACGA
T
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