FC931710

Overview
NameFC931710
Unique NameFC931710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15378 contig Ccv1_Contig15378:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 75/217 (34.56%), Postives = 120/217 (55.30%), Query Frame = 1
Query:    4 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVG--IYNVGTGKG 642
            F + DL +   ++  FS+  FDAV+HFA +  VGES L+P  YY N    T+ + + M++     L+ SS+   YG+P+++P  E++    +NPYG++K   E++  D  +  ++  +++LRYFN + +   G++GE PR        +       A   +  L + G DY T DGT +RDYI V DL D H+ AL +      +G   YN+GTG+G
Sbjct:   67 FHHGDLRNIHDLDILFSKTKFDAVIHFAGLKGVGESVLNPSNYYDNNLVATINLFQVMSKFNCKKLVISSSATVYGQPDQIPCVEDSNLHAMNPYGRSKLFVEEVARDIQRAEAEWRIILLRYFNPVGAHESGQIGEDPR---GLPNNLMPYIQQVAVARLPELNIYGHDYPTKDGTAIRDYIHVMDLADGHIAALRKLFTTDNIGCTAYNLGTGRG 280          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 86/222 (38.74%), Postives = 116/222 (52.25%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEETPQAPINPYGKAKKMAEDIILDFS-KNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGI---YNVGTGKG 642
            +F   DL + + +NK F +   D+V+HFA +  VGEST  PL YY N    T+ +LE M  H V  L++SS+   YG+  +    +PI E  P  P NPYGK K   ED++ D    +   +  ILRYFN I + P G +GE P   L     +       A G    L V G DY + DGT +RDYI V DL   H+ AL+  + K  G    +N+GTG G
Sbjct:   57 KFAKIDLCELEPLNKLFDDYKIDSVLHFAGLKAVGESTQIPLTYYFNNIVGTINLLECMKSHDVKKLVFSSSATVYGDATRFENMIPIPETCPTGPTNPYGKTKLTIEDMMRDLHFSDKSFSFAILRYFNPIGAHPSGVIGEDP---LGIPNNLLPFMAQVAIGRRPKLYVFGDDYDSVDGTPIRDYIHVVDLAKGHLAALKYLE-KYAGTCREWNLGTGHG 274          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE_PONAB (UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 82/217 (37.79%), Postives = 116/217 (53.46%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKG 642
            +F   D+ D  A+ + F +++F AV+HFA +  VGES   PL YY    + T+ +LE M  HGV  L++SS+   YG P+ +P+ E  P     NPYGK+K   E++I D  + +     ++LRYFN   +   G +GE P+        +       A G    L V G DY T DGT VRDYI V DL   H+ AL + + +    IYN+GTG G
Sbjct:   61 EFEEMDILDQGALQRLFKKHSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQ---GIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTG 274          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 82/217 (37.79%), Postives = 115/217 (53.00%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAP-INPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKG 642
            +F   D+ D  A+ + F + +F AV+HFA +  VGES   PL YY    + T+ +LE M  HGV  L++SS+   YG P+ +P+ E  P     NPYGK+K   E++I D  + +     ++LRYFN   +   G +GE P+        +       A G    L V G DY T DGT VRDYI V DL   H+ AL + + +    IYN+GTG G
Sbjct:   61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQ---GIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTG 274          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.843e-30
Identity = 83/216 (38.43%), Postives = 117/216 (54.17%), Query Frame = 1
Query:    7 IYA-DLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQ-APINPYGKAKKMAEDIILDFS-KNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKK-VGIYNVGTGKG 642
            +YA D+ D   ++  F+ +   AV+HFA +  VGES   PL+YY+N    TLV+LE+M    V  LI+SS+   YG+  ++P  E  P  +P +PYG++K M E I+ D    +    + ILRYFN + + P G +GE P+        +       A G    L + G  Y T DGT VRDYI V DL D HV A++    K  V I+N+G G G
Sbjct:   54 LYAGDIRDRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTLVLLEAMRAAQVKNLIFSSSATVYGDQPQIPYVESFPTGSPSSPYGRSKLMVEQILQDVQLADPQWNMTILRYFNPVGAHPSGLMGEDPQ---GIPNNLMPFIAQVAVGRRESLAIFGNGYPTPDGTGVRDYIHVVDLADGHVAAMKTLHGKPGVHIFNLGAGVG 266          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 78/217 (35.94%), Postives = 120/217 (55.30%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP-QAPINPYGKAKKMAEDIILDFSKN-SDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQ-PKKVGIYNVGTGKG 642
            +F   D+ D   + K F+EN  ++V+HFA +  VGE++ +      N  + ++V++E M +  V+T+++SS+   YG+P+ +PI E  P     NPYG +K M E I+ D  K    ++ ++LRYFN + +   G +GE P         +       A G +  L V G DY+T DGT VRDYI V DL   H+KAL++ Q      +YN+GTG G
Sbjct:   53 KFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERILEDTVKAFPQLSAVVLRYFNRVGAHESGLIGEDPN---GIPNNLMPFISQVAVGKLPQLSVFGGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTG 266          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 83/222 (37.39%), Postives = 115/222 (51.80%), Query Frame = 1
Query:    4 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGI---YNVGTGKG 642
            F   DL D  A+++ F      AV+HFAA+  VGEST  PL YY N     + +L+ M  + V  +++SS+   YG+  +    +PI E  P  P NPYG+ K   E+II D ++ +      ILRYFN I + P G +GE P   L     +       A G    L V G+DY++ DGT +RDYI V DL   H+ AL      K  G+   +N+GTG G
Sbjct:   55 FFKIDLNDHDALDQVFKLYPIQAVLHFAALKAVGESTKFPLNYYSNNVGGAISLLKVMEENNVKNIVFSSSATVYGDATRFENMIPIPEHCPTGPTNPYGETKITIENIIRDVYANDKSWKCAILRYFNPIGAHPSGLIGEDP---LGIPNNLLPFLAQVAIGRREKLSVFGSDYNSKDGTPIRDYIHVIDLAKGHIAALNYLFNHKDNGLCREWNLGTGNG 273          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 86/224 (38.39%), Postives = 113/224 (50.45%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEK----MPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQP--KKVGIY---NVGTGKG 642
            +F   DL D + + + F       V+HFAA+  VGES   PL+YY N    T+ +L  M  H V T+++SS+   YG+  +    +PI E  P  P NPYGK K   E+II D  + ++     ILRYFN I + P G LGE P   L     +       A G    L V G DY + DGT +RDYI V DL   H+ AL          G+Y   N+GTGKG
Sbjct:   58 KFFKLDLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDNNICGTITLLNVMREHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENIIKDLHTSDNTWRGAILRYFNPIGAHPSGLLGEDP---LGIPNNLLPFLAQVAIGRREKLLVFGDDYDSHDGTPIRDYIHVVDLAKGHIAALNYLNKINNSEGMYREWNLGTGKG 278          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.236e-26
Identity = 79/218 (36.24%), Postives = 116/218 (53.21%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETP--QAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKG 642
            +F   D+ D  A+   F ++ F AV+HFA +  VGES   PL YY    + T+ +LE M   GV +L++SS+   YG+P  +P +   P  +    PYGK+K   E++I D  + ++    ++LRYF  I +    R+GE P+        +       A G    L V G DY+T DGT VRDYI V DL   H+ AL++ + +    IYN+GTG G
Sbjct:   61 EFEEMDILDQAALQHLFKKHNFKAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMRAMGVKSLVFSSSATVYGKP--VPASGRGPPHRGCTKPYGKSKFFIEEMIQDLCRADTAWNAVLLRYFIPIGAHRSARIGEDPQ---GIPNNLMPYVSQVAIGRREALNVFGDDYATEDGTGVRDYIHVVDLAKGHIAALKKLKEQCGCRIYNLGTGTG 273          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE_MYCGE (UDP-glucose 4-epimerase OS=Mycoplasma genitalium GN=galE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 72/227 (31.72%), Postives = 111/227 (48.90%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMAR-HGVDTLIYSSTCATYGEPEKMPITEE---TPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGII-AGLK-----VKGTDYSTADGTCVRDYIDVNDLVDAHV---KALERAQPKKVGIYNVGTGKG 642
            +F +ADL D   + +  +    D V HFAA   V ES  +PLKY+      TL ++ +++       L ++S+ A YG+     I+EE   T     NPYG +K + E I+   +KNS + V+ LR+FNV  +             +   G  +G        ++ A LK     + G DY+T DG+C+RDYI V D+ +AH    K L   +  K   +N+G+G G
Sbjct:   55 EFYFADLLDRHKLTEVIAAIQPDVVFHFAAKTSVSESVHNPLKYFDCNVIGTLNLISAISNLQKPIKLFFASSAAVYGQTTNSYISEEIVITETQATNPYGLSKFLDELILNAVAKNSQLQVVCLRFFNVAGA-------------ILPFGNFNGNTTLLIPNLVKAFLKQTPFFLYGNDYATKDGSCIRDYIHVYDICNAHFLLWKWLNDHRQIKFETFNLGSGIG 268          
The following BLAST results are available for this feature:
BLAST of FC931710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
GALE1_CYATE7.482e-3234.56UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GAL10_KLULA2.177e-3138.74Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]
GALE_PONAB3.713e-3137.79UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE... [more]
GALE_HUMAN8.272e-3137.79UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]
GALE_YERPE1.843e-3038.43UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
GALE_PASHA7.003e-3035.94UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]
GAL10_PACTA7.003e-3037.39Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GAL10_SCHPO9.146e-3038.39Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GALE_RAT1.236e-2636.24UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
GALE_MYCGE9.486e-1931.72UDP-glucose 4-epimerase OS=Mycoplasma genitalium G... [more]

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Properties
Property NameValue
Genbank descriptionC34108B05EF PostHarvP1 Citrus clementina cDNA clone C34108B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931710 ID=FC931710; Name=FC931710; organism=Citrus clementina; type=EST; length=646bp
CAGTTTATTTATGCTGACCTGGGTGATGCTAAAGCTGTTAACAAATTTTT
TTCAGAAAATGCATTTGATGCTGTAATGCATTTTGCAGCTGTTGCTTATG
TTGGAGAAAGCACCCTTGATCCTCTCAAATATTATCACAACATTACGTCA
AATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGGCGTGGATACTTT
GATATATTCCAGTACATGCGCAACATACGGAGAGCCTGAAAAGATGCCCA
TTACTGAAGAAACTCCACAGGCTCCAATTAATCCATATGGTAAAGCTAAG
AAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAATTCAGACATGGC
AGTTATGATCCTAAGGTACTTCAATGTCATCAGTTCTGATCCAGAGGGTA
GATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCATGGGCGAATATCA
GGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGGGCTGAAGGTCAA
AGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTCGTGATTATATTG
ACGTCAATGATCTGGTTGACGCTCATGTCAAAGCTCTTGAGAGGGCACAA
CCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAAAGGGAGAT
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