FC931723

Overview
NameFC931723
Unique NameFC931723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:169..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 3
Query:  342 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSTGYSKGDGLGAEIVGTFVLVYTVFSAT 677
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGST 151          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 40/118 (33.90%), Postives = 57/118 (48.31%), Query Frame = 3
Query:  342 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSTGYSKGDGLGAEIVGTFVLVYTVFSAT 677
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGST 151          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQPB_DICDI (Aquaporin B OS=Dictyostelium discoideum GN=wacA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 46/148 (31.08%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  237 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSK-----CSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSTGYSKGDGLGAEIVGTFVLVYTV 665
            F R  +AEF  T   +YI   + +  + + S      C    +QG A+A      A+++  +GISG  +NPAVT G     ++ +   + ++I QC+GA+ GA ++K    + YE     A  L+TG +   G   E+V T  LV+ V
Sbjct:   30 FTRQLLAEFFGTLFVVYIVSGSTLAANFAVSDPIVRVCLICLVQGFAFA------AIIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKASLPTFYER-DLSATTLATGVNVARGFFLEMVTTSFLVFVV 170          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 3
Query:  342 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAV--VKGFQKSQYEMLGGGANMLST----GYSKGDGLGAEIVGTFVLVYTVFSAT 677
            +G+ G+++AFG  +  + Y   GISGGH NPAV+ GL +A ++     V Y++ Q  GAI  AAV  V    K+ +++ G  AN        GYS    L  E+V T   +  +  +T
Sbjct:   34 IGLLGVSFAFGLTVLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLIILGST 151          
The following BLAST results are available for this feature:
BLAST of FC931723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
AQPZ_BRUAB4.952e-1133.90Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA24.952e-1133.90Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQPB_DICDI4.952e-1131.08Aquaporin B OS=Dictyostelium discoideum GN=wacA PE... [more]
AQPZ1_RHIME8.446e-1134.75Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC34108C06EF PostHarvP1 Citrus clementina cDNA clone C34108C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931723 ID=FC931723; Name=FC931723; organism=Citrus clementina; type=EST; length=703bp
GGAGCCCGTTGTGCCATTTATTTATTCAATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCACAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACACTGTCTTCTCGGCCACTGATGTCAAGCGCAATGCCCGCGA
TTC
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