FC931723

Overview
NameFC931723
Unique NameFC931723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.836e-20
Identity = 57/153 (37.25%), Postives = 93/153 (60.78%), Query Frame = 3
Query:  234 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            +F++A  AEF+A  +F+ +++ + +    ++ K   V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++  +  +   ++GG G  M+    + G GL  E++ TF LV+T+F++ D KR
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR 182          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 57/153 (37.25%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  234 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            +F++A  AEF+A  +F+ ++V + +    S++    V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++  +  +   ++GG G   +    + G GL  E++ TF LV+T+F++ D KR
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR 182          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.622e-20
Identity = 57/153 (37.25%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  234 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            +F++A  AEF+A  +F+ ++V + +    S++    V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++  +  +   ++GG G   +    + G GL  E++ TF LV+T+F++ D KR
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPNVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR 185          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 56/153 (36.60%), Postives = 90/153 (58.82%), Query Frame = 3
Query:  234 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            +F++A  AEF+A  +F+ +++ + +     K     V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++VFY+  QCLGAI GA ++  +  +   ++GG G   +    + G GL  E++ TF LV+T+F++ D KR
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWG-GKENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR 182          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 56/153 (36.60%), Postives = 92/153 (60.13%), Query Frame = 3
Query:  234 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            +F++A  AEF+A  +F+ +++ + +    ++ K   V +  I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++VFY+  QCLGAI GA ++  +  +   ++GG G   +    S G GL  E++ TF LV+T+F++ D KR
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKR 182          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 55/160 (34.38%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKRNA 695
            E+ S +F +A  AEF+AT +F++  + + +     K   +   +  I+ AFG  I  +      +SGGH+NPA+T  L +  ++SL RAVFY++ Q +GAI GAA++ G   + Y        N L+   + G  + AE++ TF L   VFS+TD +R +
Sbjct:    4 EVCSAAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSAMPSVLQISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGL--APYNARSNLAVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTS 156          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 55/159 (34.59%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKRNA 695
            E+ S +F +A  AEF+AT +F++  + + +     K   +   I  IA AFG  I  L      +SGGHINPA+T  L +  ++SL RAVFY++ Q +GAI GA ++ G             N L+   + G  +  E++ TF L   +FS+TD +R +
Sbjct:    4 EVCSLAFLKAVFAEFLATLIFVFFGLASAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARG-NLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTS 156          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 54/153 (35.29%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  234 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            + +R  +AEF+ TF  + I + +  G +      +      IA+ FG ++  L      +SG HINPAVT GL +   +S+ +  FY++ QC+GAI GAAV+K    S  E++GG G   ++ G S G G+  E + TF+LV+ V    D +R
Sbjct:   21 NIWRMLVAEFLGTFFLVAIGIGSTTGWTDYSPTLTQ-----IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPS--EVVGGLGVTGIAPGLSTGQGVLIEALITFMLVFVVHGVCDNRR 166          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 60/161 (37.27%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKRNAR 698
            E  S+SF+RA  AEF  T  +++      +G S  K       +  IA AFG ++  +V     +SG HINPAVTF   +  ++SL RA+FY+  Q LGA+ GAAV+ G   +   + G  A N L  G S G     EI  T   V  +F+  D +RN R
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFG----LGASL-KWAAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA--AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSTGYSKGDGLGAEIVGTFVLVYTVF-SATDVKR 689
            P E +     +AG+AEF++TF+F++    + +  +K  +    +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R + Y+I Q LG+I  +A++     S     G     LS G   G  L  EIV TF LVYTV+ +A D K+
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK 167          
The following BLAST results are available for this feature:
BLAST of FC931723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
AQP4_HUMAN5.836e-2037.25Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_RAT7.622e-2037.25Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_NOTAL7.622e-2037.25Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_DIPME2.896e-1936.60Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_BOVIN2.896e-1936.60Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_SHEEP4.182e-1834.38Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP5_PIG5.462e-1834.59Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
AQP_ANOGA1.589e-1735.29Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
MIP_RANPI2.076e-1737.27Lens fiber major intrinsic protein OS=Rana pipiens... [more]
TIP1_MEDTR2.711e-1735.80Probable aquaporin TIP-type OS=Medicago truncatula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108C06EF PostHarvP1 Citrus clementina cDNA clone C34108C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931723 ID=FC931723; Name=FC931723; organism=Citrus clementina; type=EST; length=703bp
GGAGCCCGTTGTGCCATTTATTTATTCAATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCACAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACACTGTCTTCTCGGCCACTGATGTCAAGCGCAATGCCCGCGA
TTC
back to top