FC931723

Overview
NameFC931723
Unique NameFC931723
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 56/159 (35.22%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKRN 692
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV  +F++TD +R+
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRS 154          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 57/162 (35.19%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSTGYSKGDGLGAEIVGTFVLVYTVF-SATDVKR 689
            P E +     +AG+AEF++TF+F++    + +  +K  +    +  G+   + A    +F  V   A ISGGH+NPAV FG F+   ++L R + Y+I Q LG+I  +A++     S     G     LS G   G  L  EIV TF LVYTV+ +A D K+
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK 166          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  216 GELSSWSFYRAGIAEFVATFLFLYITVLTVM--GVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSTGYSKGDGLGAEIVGTFVLVYTVF-SATDVKRNA 695
            G+  S +  +A +AEF+AT LF++  V + +  G   +       G+  IA A    +F  V   A ISGGH+NPAVTFGL +   +++   +FY I Q LGA     ++K     +     G A     G S+ +G+  EIV TF LVYTV+ +A D K+ +
Sbjct:   10 GDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVA-----GISELEGVVMEIVITFALVYTVYATAADPKKGS 167          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 59/161 (36.65%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKRNAR 698
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+  +  +   + G  A N L  G S       EI  T   V  +F+  D +RN R
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV  +F++TD +R
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERR 153          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  213 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSTGYSKGDGLGAEIVGTFVLVYTVF-SATDVKR 689
            PGE S     RA  AEF +  +F++    + M   K       +  G+   + +    +F  V   A +SGGH+NPAVTFG F+   ++L RA+ Y I Q LGA+    ++K          GG    A  LS G +  + +  EIV TF LVYTV+ +A D K+
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK-------VSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK 168          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKRNAR 698
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+  +  +   + G  A N L    S G     EI  T   V  +F+  D +RN +
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQ 156          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            EL S +F RA  AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     ISG HINPAVT    +   +S+ RA FY+  Q LGA+ GAA++   + +  ++ G    N LS   + G  +  E+  T  LV  +F++TD +R
Sbjct:    3 ELRSIAFSRAVFAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALL--HEITPADIRGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERR 153          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 52/154 (33.77%), Postives = 77/154 (50.00%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATD 680
            E+ +  F+R+ I+E +A+F++++I      GV    S  S   +   A A G  +  L  C   ISG HINPAVT  L + R +S  RA  Y+  QC G I GAA++ G     Y+     A   S   +  +  G E + TF++V   F +TD
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTD 209          
BLAST of FC931723 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  219 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSTGYSKGDGLGAEIVGTFVLVYTVFSATDVKR 689
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RAVFY+  Q LGA+ GAA++   + +   + G    N L+   + G  +  E+  T  LV  +F++TD +R
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL--HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERR 153          
The following BLAST results are available for this feature:
BLAST of FC931723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
AQP2_MOUSE4.328e-1535.22Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP1_MEDSA5.652e-1535.19Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP21_ORYSJ7.382e-1535.58Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
MIP_CAVPO7.382e-1536.65Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQP2_RAT7.382e-1535.44Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP13_ARATH9.642e-1534.55Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
MIP_HUMAN9.642e-1535.40Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQP2_HUMAN9.642e-1535.44Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
BIB_DROME1.259e-1433.77Neurogenic protein big brain OS=Drosophila melanog... [more]
AQP2_BOVIN1.259e-1434.81Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108C06EF PostHarvP1 Citrus clementina cDNA clone C34108C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931723 ID=FC931723; Name=FC931723; organism=Citrus clementina; type=EST; length=703bp
GGAGCCCGTTGTGCCATTTATTTATTCAATTCACTCCCAAGAAACTTGAA
CCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGA
GGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAA
CCGCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCG
CCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGG
CATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAA
CAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATC
CAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTG
CACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGC
TGTTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATA
ATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCA
GAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCACAG
GCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTT
CTTGTTTACACTGTCTTCTCGGCCACTGATGTCAAGCGCAATGCCCGCGA
TTC
back to top