FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_PSEPK (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 56/213 (26.29%), Postives = 99/213 (46.48%), Query Frame = 1
Query:   67 TPGCFVNGKWKAHGP--TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            T   +++G +   G   T  +INPA  + +A V  A+  D E+ +++     K+W  + A +R  ++R+  D LRE+   L  L +++ GK   E    ++    D+ ++  GL   + G  IP  R +  +     PLGV   I A+N+P  +  W +  AL  GN +++K               ++E++    LP  +F    G G E+G
Sbjct:    6 TQKLYIDGAYVDAGSDATFEAINPATGEVLAHVQRATEADVEKAVESAERGQKVWAAMTAMQRSRILRRAVDILRERNDELAMLETLDTGKSYSETRYVDIVTGADVLEYYAGLVPAIEGEQIPL-RESSFVYTRREPLGVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLK----LAEIYTEAGLPNGVFNVLTGSGREVG 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_PSEP1 (Betaine aldehyde dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=betB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 56/213 (26.29%), Postives = 99/213 (46.48%), Query Frame = 1
Query:   67 TPGCFVNGKWKAHGP--TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            T   +++G +   G   T  +INPA  + +A V  A+  D E+ +++     K+W  + A +R  ++R+  D LRE+   L  L +++ GK   E    ++    D+ ++  GL   + G  IP  R +  +     PLGV   I A+N+P  +  W +  AL  GN +++K               ++E++    LP  +F    G G E+G
Sbjct:    6 TQKLYIDGAYVDAGSDATFEAINPATGEVLAHVQRATEADVEKAVESAERGQKVWAAMTAMQRSRILRRAVDILRERNDELAMLETLDTGKSYSETRYVDIVTGADVLEYYAGLVPAIEGEQIPL-RESSFVYTRREPLGVTVGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLK----LAEIYTEAGLPNGVFNVLTGSGREVG 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_CHRSD (Betaine aldehyde dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 52/197 (26.40%), Postives = 88/197 (44.67%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            G T +  NP +   +AT+ +AS  D +  ++A     + W  +   +R  ++ +    LRE+   L  L +   GK + E    ++    D  ++  GL+  + GS IP  R   ++     PLGV+G I A+N+P  +  W A  AL  GN +V+K               ++E+F    LP  +F    G   +G
Sbjct:   21 GETFTVTNPYDGSLLATIGQASQADVDSAVQAAQRGQREWAAMTGMERSRILLRAVALLRERNDELAELETRNTGKPISETASVDIVTGADALEYYAGLAPAIEGSQIPL-RDTRLVYTRREPLGVIGAIGAWNYPIQIACWKAAPALAAGNAIVFKPSEVTPLTALK----LAEIFTEAGLPDGVFNVVQGDGRVG 212          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BURP8 (Betaine aldehyde dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 51/197 (25.89%), Postives = 90/197 (45.69%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            G T  + +PA  + +ATV +AS  D E  +++  E  + W  + A +R  ++R+  D LRE+   L  L   + GK + E    ++    D+ ++  GL+  + G  IP  R    +     PLGV   I A+N+P  +  W +  AL  GN +++K               ++E++    +P  +F    G   +G
Sbjct:   21 GVTFDTFDPATGELLATVQQASEADIERAVQSAREGQRAWAAMTAMQRSRILRRAVDLLRERNDELAELEMRDTGKPIAETRAVDIVTGADVIEYYAGLATAIEGQQIPL-RAESFVYTRREPLGVTAGIGAWNYPIQIACWKSAPALAAGNAMIFK----PSEVTPLSASKLAEIYLEAGVPAGVFNVVQGDGRVG 212          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_XANC5 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 55/200 (27.50%), Postives = 90/200 (45.00%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            G T   +NPA  + +A V  A  +D +  + +     + W  L   +R  ++ +    LRE+   L  L ++  GK L E    +V    D+ ++  G+++ L G+ +P  R          PLGVVG I A+N+P  +  W A  AL  GN +++K               ++E+F    LP  +F    G GA +G A
Sbjct:   21 GHTFEVVNPATGEVLANVHNAGADDLDAAVDSAQAGQRQWAALTTVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDVVTGADVLEYYAGVAQALQGAQVPL-REGSFFYTRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALK----LAEIFTEAGLPDGVFNVLPGDGASVGTA 215          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ALDA_ECOLI (Lactaldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=aldA PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 56/195 (28.72%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  115 VSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQ 696
            +  +NPA    I+ + +   ED  + + A   A   W  LPA +R   +R+I   +RE+   +  L+  E GKI      EV    D  D+    +R+  G +I S+RP   +L     LGV   I  +NFP  ++      AL+ GN +V K             K+V E+     LP  +F    G G  +GQ
Sbjct:   24 IDVVNPATEAVISRIPDGQAEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEI----GLPRGVFNLVLGRGETVGQ 214          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: MMSA_RAT (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Rattus norvegicus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 47/174 (27.01%), Postives = 83/174 (47.70%), Query Frame = 1
Query:   58 SPETPGCFVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            S  T   F++GK+        +   NPA N+ +  V +++  + E  + AC  A   W +     R +V+ +    ++E L  + RL+++E GK L +  G+V   + + + A  ++  + G  +PS   +  +     PLGV   I  FNFP  +  W   +A+VCGN  + K
Sbjct:   36 SVPTVKLFIDGKFVESKSDKWIDIHNPATNEVVGRVPQSTKAEMEAAVAACKRAFPAWADTSILSRQQVLLRYQQLIKENLKEIARLITLEQGKTLADAEGDVFRGLQVVEHACSVTSLMLGETMPSITKDMDLYSYRLPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMK 209          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: MMSA_PSEAE (Methylmalonate-semialdehyde dehydrogenase [acylating] OS=Pseudomonas aeruginosa GN=mmsA PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 49/167 (29.34%), Postives = 75/167 (44.91%), Query Frame = 1
Query:   73 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            G FV G      P     NP +N  +A +  AS E  E+ + +  E    W E P  +R  V+ +    L+E    L +++S E+GK   +  G+V   I++ + A  +   L G  + +   N        PLGV   IT FNFP  +  W   +A+ CGN  + K
Sbjct:   11 GAFVEGLGAQRIPVS---NPLDNSTLAEIACASAEQVEQAVASARETFASWKETPVSERARVMLRYQALLKEHHDELAKIVSSELGKTFEDAKGDVWRGIEVVEHACNVPSLLMGETVENVARNIDTYSITQPLGVCVGITPFNFPAMIPLWMFPLAIACGNAFILK 174          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA_LISMC (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=iolA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 57/206 (27.67%), Postives = 90/206 (43.69%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEI 690
            ++NG+W           INPA  + +  V  ++  + ++      +A + W ++  P+R  V+      L +    L RL+++E GK L E  GEVQ  I+  +FA G    + G  + S   +        P+GVVG I  FNFP  V  W   +A+  GN  + K             KLV E+F    LP  +F    G  ++
Sbjct:   10 YINGEWVESRADKYEDVINPATGEVLCQVPISTRAELDQAAVIAEQAFEKWSQVAVPRRARVLFSFQQLLIQHKEELARLITLENGKNLSEARGEVQRGIENVEFAAGAPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILK---PSERTPLLMEKLV-ELFSEAGLPKGVFNVVYGAHDV 211          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA_LISIN (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria innocua GN=iolA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 57/206 (27.67%), Postives = 90/206 (43.69%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEI 690
            ++NG+W           INPA  + +  V  ++  + ++      +A + W ++  P+R  V+      L +    L RL+++E GK L E  GEVQ  I+  +FA G    + G  + S   +        P+GVVG I  FNFP  V  W   +A+  GN  + K             KLV E+F    LP  +F    G  ++
Sbjct:   10 YINGEWVESKADKYEDVINPATGEVLCQVPISTRAELDQAAVIAEQAFEKWSQVAVPRRARVLFSFQQLLIQHKEELARLITLENGKNLSEARGEVQRGIENVEFAAGAPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILK---PSERTPLLMEKLV-ELFSEAGLPKGVFNVVYGAHDV 211          
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
BETB_PSEPK1.024e-1426.29Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_PSEP11.024e-1426.29Betaine aldehyde dehydrogenase OS=Pseudomonas puti... [more]
BETB_CHRSD1.024e-1426.40Betaine aldehyde dehydrogenase OS=Chromohalobacter... [more]
BETB_BURP81.024e-1425.89Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
BETB_XANC51.338e-1427.50Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
ALDA_ECOLI1.338e-1428.72Lactaldehyde dehydrogenase OS=Escherichia coli (st... [more]
MMSA_RAT1.747e-1427.01Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
MMSA_PSEAE2.282e-1429.34Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
IOLA_LISMC2.282e-1427.67Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA_LISIN2.282e-1427.67Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
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