FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: MMSA_HUMAN (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 47/179 (26.26%), Postives = 83/179 (46.37%), Query Frame = 1
Query:   43 SEIGLSPETPGCFVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            S    S  T   F+ GK+        +   NPA N+ I  V +A+  + +  + +C  A   W +     R +V+ +    ++E L  + +L+++E GK L +  G+V   + + + A  ++  + G  +PS   +  +     PLGV   I  FNFP  +  W   +A+VCGN  + K
Sbjct:   31 SSFSSSVPTVKLFIGGKFVESKSDKWIDIHNPATNEVIGRVPQATKAEMDAAIASCKRAFPAWADTSVLSRQQVLLRYQQLIKENLKEIAKLITLEQGKTLADAEGDVFRGLQVVEHACSVTSLMMGETMPSITKDMDLYSYRLPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMK 209          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: MMSA_DICDI (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Dictyostelium discoideum GN=mmsdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 44/171 (25.73%), Postives = 81/171 (47.37%), Query Frame = 1
Query:   67 TPGCFVNGKWKAHGPT--VSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            T   F+NGK+        +   NPA  + +  V  ++ E+ E  +KA S+A   W +     R  ++    + + + +  +  +++ E GK LP+  G+V   +++ + +V ++  + G  + +   N  +     PLGV   IT FNFP  +  W   +A+ CGN  V K
Sbjct:   29 TTKLFINGKFVESKTKEWLEVRNPATQELVTKVPVSTKEEMEAAVKAASDAFPAWRDTSVSNRSRIISNYKNLINKNMDKIAAIITEEQGKTLPDAKGDVFRGLEVVEHSVNVASLMMGETVENVSKNVDIYSYVQPLGVCAGITPFNFPAMIPLWMFPLAIACGNTFVLK 199          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA_LISMF (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes serotype 4b (strain F2365) GN=iolA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 57/206 (27.67%), Postives = 90/206 (43.69%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEI 690
            ++NG+W           INPA  + +  V  ++  + ++      +A + W ++  P+R  V+      L +    L RL+++E GK L E  GEVQ  I+  +FA G    + G  + S   +        P+GVVG I  FNFP  V  W   +A+  GN  + K             KLV E+F    LP  +F    G  ++
Sbjct:   10 YINGEWVESRADKYEDVINPATGEVLCQVPISTRAELDQAAVIAEQAFEKWSQVAVPRRARVLFSFQQLLIQHKEKLARLITLENGKNLSEARGEVQRGIENVEFAAGAPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILK---PSERTPLLMEKLV-ELFSEAGLPKGVFNVVYGAHDV 211          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_XANCP (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris GN=betB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 54/200 (27.00%), Postives = 89/200 (44.50%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            G T   +NPA  + +A V  A  +D +  + +     + W  L   +R  ++ +    LRE+   L  L ++  GK L E    ++    D+ ++  G+++ L G  +P  R          PLGVVG I A+N+P  +  W A  AL  GN +++K               ++E+F    LP  +F    G GA +G A
Sbjct:   21 GHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAGQRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQGVQVPL-REGSFFYTRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALK----LAEIFTEAGLPDGVFNVLPGDGASVGHA 215          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_XANCB (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 54/200 (27.00%), Postives = 89/200 (44.50%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            G T   +NPA  + +A V  A  +D +  + +     + W  L   +R  ++ +    LRE+   L  L ++  GK L E    ++    D+ ++  G+++ L G  +P  R          PLGVVG I A+N+P  +  W A  AL  GN +++K               ++E+F    LP  +F    G GA +G A
Sbjct:   21 GHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAGQRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQGVQVPL-REGSFFYTRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALK----LAEIFTEAGLPDGVFNVLPGDGASVGHA 215          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_XANC8 (Betaine aldehyde dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 54/200 (27.00%), Postives = 89/200 (44.50%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            G T   +NPA  + +A V  A  +D +  + +     + W  L   +R  ++ +    LRE+   L  L ++  GK L E    ++    D+ ++  G+++ L G  +P  R          PLGVVG I A+N+P  +  W A  AL  GN +++K               ++E+F    LP  +F    G GA +G A
Sbjct:   21 GHTFEVVNPATGEVLANVHNADADDLDAAVDSAKAGQRHWAALTVVERSRILLRAVALLRERNDALAELETLNTGKPLSETRSVDIVTGADVLEYYAGVAQALQGVQVPL-REGSFFYTRHEPLGVVGAIGAWNYPIQIALWKAAPALAAGNAMIFKPSEVTPLTALK----LAEIFTEAGLPDGVFNVLPGDGASVGHA 215          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 49/171 (28.65%), Postives = 81/171 (47.37%), Query Frame = 1
Query:   79 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N +W       T  ++NP   + I  V E    D +  +KA  EA ++   W  + A +RG ++ ++ D +     +L  L +++ GK   E  + ++ EVI +  +  G + + +G  IP +   H       P+GV G I  +NFP  + GW    AL  GN VV K
Sbjct:   42 FINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDG-EHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMK 211          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 46/170 (27.06%), Postives = 81/170 (47.65%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N ++    +G   S INP   +KI  V E S  D ++ ++AC  A K    W  + A +RG ++ ++ D     + +L  L ++  GK       ++   I +  +  G + +  G  IP +  +        P+G+ G+I  +N+P  ++ W    AL CGNC+V K
Sbjct:   19 FINNQFVDSVNGKAYSVINPCTTKKICDVQEGSKADIDKAVQACKLAFKRGTPWRRMDASRRGHLLYRLADLFERDIAYLSSLETLNTGKPYKSAYQDIVHCIQVLRYYAGWADKNMGQNIPVDG-DFFSFTKHEPVGICGLIIPWNYPMLMMTWKMAPALSCGNCIVVK 187          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ABDH_SERP5 (Gamma-aminobutyraldehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=Spro_3642 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 59/209 (28.23%), Postives = 89/209 (42.58%), Query Frame = 1
Query:   82 VNGKW-KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK----ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            +NG+     G  +   NPA  + +  V EAS E  ++ + A   A + W +    +R E + ++ D +        RL SI  GK    +L +   E+  V D+  F  G SR L+G         H  +   +PLGVV  I  +N+P  +  W    AL  GNCVV K             +L + +F     PG +   F  GA +G
Sbjct:    7 INGQLVTGQGALLPVYNPATGEVVVQVAEASAEQVDQAVLAADAAFEHWGQTTPKERAEHLLKLADLIDSHAETFARLESINCGKPYHCVLND---ELPGVADVFRFFAGASRCLSGLAAGEYLAGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEQTPLTTFKLAELAAGLFP----PGVLNVLFGRGASVG 208          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: MMSA_MOUSE (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Mus musculus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 45/174 (25.86%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   58 SPETPGCFVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            S  T   F++GK+        +   NPA N+ +  V +++  + +  +++C  A   W +     R +V+ +    ++E L  + RL+++E GK L +  G+V   + + + A  ++  + G  +PS   +  +     PLGV   I  FNFP  +  W   +A+VCGN  + K
Sbjct:   36 SVPTVKLFIDGKFVESKSDKWIDIHNPATNEVVGRVPQSTKAEMDAAVESCKRAFPAWADTSILSRQQVLLRYQQLIKENLKEIARLITLEQGKTLADAEGDVFRGLQVVEHACSVTSLMLGETMPSITKDMDLYSYRLPLGVCAGIAPFNFPAMIPLWMFPMAMVCGNTFLMK 209          
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
MMSA_HUMAN2.980e-1426.26Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
MMSA_DICDI2.980e-1425.73Probable methylmalonate-semialdehyde dehydrogenase... [more]
IOLA_LISMF2.980e-1427.67Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_XANCP2.980e-1427.00Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANCB2.980e-1427.00Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
BETB_XANC82.980e-1427.00Betaine aldehyde dehydrogenase OS=Xanthomonas camp... [more]
AL1B1_MOUSE2.980e-1428.65Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
CROM_ENTDO3.892e-1427.06Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
ABDH_SERP53.892e-1428.23Gamma-aminobutyraldehyde dehydrogenase OS=Serratia... [more]
MMSA_MOUSE5.083e-1425.86Methylmalonate-semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
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