FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_GEOSW (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=rocA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 58/195 (29.74%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  115 VSSINPANNQK-IATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            + SINPAN  + I  V +A+ E  E+ MK   EA K W +     R +++ +    +R + H    L+  E GK   E   +  E ID  ++      +L   V    RP       + PLGV  VI+ +NFP A++      +LV GN V+ K                +EV E   LP  +     G GAE+G
Sbjct:   52 IVSINPANKTEVIGRVSKANKELAEKAMKVADEAFKWWSKTKPEARADILFRAAAIVRRRKHEFSALMVKEAGKPWKEADADTAEAIDFMEYYARQMLKLKDGVPVESRPGETNRFFYIPLGVGVVISPWNFPFAIMAGTTVASLVTGNTVLLKPASATPVVAYK----FAEVLEEAGLPAGVLNYIPGSGAEVG 242          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA_LISMO (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Listeria monocytogenes GN=iolA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 56/206 (27.18%), Postives = 90/206 (43.69%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEI 690
            +++G+W           INPA  + +  V  ++  + ++      +A + W ++  P+R  V+      L +    L RL+++E GK L E  GEVQ  I+  +FA G    + G  + S   +        P+GVVG I  FNFP  V  W   +A+  GN  + K             KLV E+F    LP  +F    G  ++
Sbjct:   10 YIDGEWVESKTDKYEDVINPATGEVLCQVPISTRAELDQAAVIAEQAFEKWSQVAVPRRARVLFGFQQLLIQHKEELARLITLENGKNLSEARGEVQRGIENVEFAAGAPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPCWMFPMAIALGNSFILK---PSERTPLLMEKLV-ELFSEAGLPKGVFNVVYGAHDV 211          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA2_BACSK (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus clausii (strain KSM-K16) GN=iolA2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 55/207 (26.57%), Postives = 90/207 (43.48%), Query Frame = 1
Query:   79 FVNGKWKAHGPTVSSI--NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWN-PLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEI 690
            +++G W       + +  NPA  + IA V  +   D E+ + +   A + W  +P P+R   +    + L++    L +L+++E GK + +  GEVQ  I+  + A      + G  +P +  + +    W  PLGVV  IT FNFP  V  W   +A+  GN  V K              L+ EV     LP  +     GG  +
Sbjct:   12 WIDGAWVEASTADTEVVPNPATGEAIAYVPLSGERDVEQAVASAKRAYETWKTVPVPERTRYMFAYLEQLKKNREQLAQLITLENGKTIKDARGEVQRGIECVELATSTPTMMMGDALP-DIASGIDGSIWRYPLGVVAGITPFNFPMMVPLWMFPLAIAAGNTFVLKTSERTPLLAEQLVSLMHEV----GLPRGVLNLVNGGKAV 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 48/197 (24.37%), Postives = 89/197 (45.18%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            G T  + +PA  + +A V +AS  D +  + +  +  + W  L A +R  ++R+  D LRE+   L  + + + GK + E +  ++    D+ ++  GL+  + G  +P  R    +     PLGV   I A+N+P  +  W    AL  GN +V+K               ++E++    +P  +F    G   +G
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQQGQREWAALTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPL-RAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALK----LAEIYTEAGVPAGVFNVVQGDGSVG 212          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BURCM (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=betB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 48/197 (24.37%), Postives = 89/197 (45.18%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            G T  + +PA  + +A V +AS  D +  + +  E  + W  + A +R  ++R+  D LRE+   L  + + + GK + E +  ++    D+ ++  GL+  + G  +P  R    +     PLGV   I A+N+P  +  W    AL  GN +V+K               ++E++    +P  +F    G   +G
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQREWAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPL-RAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALK----LAEIYTEAGVPAGVFNVVQGDGSVG 212          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BURA4 (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=betB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 48/197 (24.37%), Postives = 89/197 (45.18%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            G T  + +PA  + +A V +AS  D +  + +  E  + W  + A +R  ++R+  D LRE+   L  + + + GK + E +  ++    D+ ++  GL+  + G  +P  R    +     PLGV   I A+N+P  +  W    AL  GN +V+K               ++E++    +P  +F    G   +G
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQREWAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPL-RAESFVYTRREPLGVCAGIGAWNYPIQIACWKTAPALAAGNAMVFKPSEVTPLTALK----LAEIYTEAGVPAGVFNVVQGDGSVG 212          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEA---SKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEV 630
            F+N  W     G   ++ NP+  +KI  V E    D ++ ++A   A      W  L A  RG+++ Q+ D +      L  L +++ GK  L     +++  I    +  G + ++ G  IP++  N +      P+GV G IT +NFP  +L W    AL CGN VV K              L+ EV
Sbjct:   35 FINNDWHESKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTD-DNVVCFTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVVLKPAEQTPLTALYLASLIKEV 223          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 47/171 (27.49%), Postives = 80/171 (46.78%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N +W     G      NPAN +KI  V E    D ++ +KA  +A ++   W  + A +RG ++ ++ D +      L  + +I+ GK+     + ++   I    +  G + +++G  +P +  N        P+GV G I  +NFP  +  W    AL CGN VV K
Sbjct:   32 FINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDG-NFFTFTRHEPVGVCGQIIPWNFPLVMFIWKIAPALCCGNTVVVK 201          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ABDH_ESCF3 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ydcW PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 52/190 (27.37%), Postives = 76/190 (40.00%), Query Frame = 1
Query:  127 NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            NPA    +  + EAS E  +  ++A   A   W +     R E + ++ D + E       L S   GK L      E+  ++D+  F  G +R LNG         H  +   +PLGVV  I  +N+P  +  W    AL  GNCVV K             +L  ++F      G I   F  G  +G
Sbjct:   23 NPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFP----AGVINVLFGRGKTVG 208          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ABDH_ECOSM (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 52/190 (27.37%), Postives = 76/190 (40.00%), Query Frame = 1
Query:  127 NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            NPA    +  + EAS E  +  ++A   A   W +     R E + ++ D + E       L S   GK L      E+  ++D+  F  G +R LNG         H  +   +PLGVV  I  +N+P  +  W    AL  GNCVV K             +L  ++F      G I   F  G  +G
Sbjct:   23 NPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEITPLTALKLAELAKDIFP----AGVINVLFGRGKTVG 208          
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
ROCA_GEOSW1.479e-1329.741-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
IOLA_LISMO1.479e-1327.18Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACSK1.479e-1326.57Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_BURVG1.479e-1324.37Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_BURCM1.479e-1324.37Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURA41.479e-1324.37Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
AL1A3_MOUSE1.479e-1327.89Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A1_CHICK1.479e-1327.49Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
ABDH_ESCF31.479e-1327.37Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOSM1.479e-1327.37Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
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