FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BRUO2 (Betaine aldehyde dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/210 (25.71%), Postives = 89/210 (42.38%), Query Frame = 1
Query:   73 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K               ++E ++   LP  +F    G  ++G A
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK----PSENTPLSALALAEAYKEAGLPDGLFNVVQGYGDVGAA 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BRUME (Betaine aldehyde dehydrogenase OS=Brucella melitensis GN=betB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/210 (25.71%), Postives = 89/210 (42.38%), Query Frame = 1
Query:   73 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K               ++E ++   LP  +F    G  ++G A
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK----PSENTPLSALALAEAYKEAGLPDGLFNVVQGYGDVGAA 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BRUMB (Betaine aldehyde dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/210 (25.71%), Postives = 89/210 (42.38%), Query Frame = 1
Query:   73 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K               ++E ++   LP  +F    G  ++G A
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK----PSENTPLSALALAEAYKEAGLPDGLFNVVQGYGDVGAA 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BRUAB (Betaine aldehyde dehydrogenase OS=Brucella abortus GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/210 (25.71%), Postives = 89/210 (42.38%), Query Frame = 1
Query:   73 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K               ++E ++   LP  +F    G  ++G A
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK----PSENTPLSALALAEAYKEAGLPDGLFNVVQGYGDVGAA 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BRUA2 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain 2308) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/210 (25.71%), Postives = 89/210 (42.38%), Query Frame = 1
Query:   73 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K               ++E ++   LP  +F    G  ++G A
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK----PSENTPLSALALAEAYKEAGLPDGLFNVVQGYGDVGAA 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BRUA1 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain S19) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 54/210 (25.71%), Postives = 89/210 (42.38%), Query Frame = 1
Query:   73 GCFVNGKWKAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            G FV  K    G  +  I PA  ++IA++  A+    E    A  +A   W  L   +RG ++R+  + LREK   L +L +++ GK L E  + +     D  +F  G+    NG  +  E            LG+   I A+N+P  +  W +  AL  GN  ++K               ++E ++   LP  +F    G  ++G A
Sbjct:   13 GAFVEDK---AGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKAQGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFV--ELGGSFAYTRREALGICVGIGAWNYPIQIAAWKSAPALAMGNAFIFK----PSENTPLSALALAEAYKEAGLPDGLFNVVQGYGDVGAA 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 47/171 (27.49%), Postives = 80/171 (46.78%), Query Frame = 1
Query:   79 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEA---SKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N +W+    G      NPA  +++  V EA   D ++ ++A   A     +W  + A +RG ++ ++ D +      L  + S+  GK  L     ++Q VI    +  G + +++G  IP +  ++       P+GV G I  +NFP  +  W    AL CGN VV K
Sbjct:   41 FINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIK 210          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 47/171 (27.49%), Postives = 80/171 (46.78%), Query Frame = 1
Query:   79 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEA---SKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGK-ILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N +W+    G      NPA  +++  V EA   D ++ ++A   A     +W  + A +RG ++ ++ D +      L  + S+  GK  L     ++Q VI    +  G + +++G  IP +  ++       P+GV G I  +NFP  +  W    AL CGN VV K
Sbjct:   41 FINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDG-DYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIK 210          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 47/171 (27.49%), Postives = 78/171 (45.61%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N +W     G     +NPA  + I  V E    D ++ +KA  +A +I   W  + A +RG ++ ++ D +      L  + +I  GK+     + ++   I    +  G + +++G  IPS+           P+GV G I  +NFP  +  W    AL CGN VV K
Sbjct:   24 FINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRR-EPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVK 193          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 47/171 (27.49%), Postives = 77/171 (45.03%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N +W     G      NPA  +K+  V E   ED  + + A  +A +I   W  + A +RG ++ ++ D +      L  + S+  GK+     + ++   +    +  G + ++ G  IPS+  N        P+GV G I  +NFP  +  W    AL CGN VV K
Sbjct:   23 FINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDG-NFFTYTRHEPVGVCGQILPWNFPLLMFLWKIAPALSCGNTVVVK 192          
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
BETB_BRUO28.115e-1225.71Betaine aldehyde dehydrogenase OS=Brucella ovis (s... [more]
BETB_BRUME8.115e-1225.71Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_BRUMB8.115e-1225.71Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_BRUAB8.115e-1225.71Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA28.115e-1225.71Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA18.115e-1225.71Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
AL1A2_RAT8.115e-1227.49Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE8.115e-1227.49Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A1_RAT8.115e-1227.49Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_HORSE8.115e-1227.49Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]

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Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
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