FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAES (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rocA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 42/165 (25.45%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+      T +S+NPAN +Q IA V +A+ +D E+  ++ + A + W +     R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++      +L       +R        + P+G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKLTKTDTFNSVNPANTSQLIAKVSKATQDDIEKAFESANHAYQSWKKWSHKDRAELLLRVAAIIRRRKEEISAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMELADGKPVLDREGEHNRYFYKPIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAEQ (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rocA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 42/165 (25.45%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+      T +S+NPAN +Q IA V +A+ +D E+  ++ + A + W +     R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++      +L       +R        + P+G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKLTKTDTFNSVNPANTSQLIAKVSKATQDDIEKAFESANHAYQSWKKWSHKDRAELLLRVAAIIRRRKEEISAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMELADGKPVLDREGEHNRYFYKPIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 48/174 (27.59%), Postives = 79/174 (45.40%), Query Frame = 1
Query:   79 FVNGKWKA--HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI--WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGS-----VIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F++G+W+       +  INP+  + I  +  A+ ED E  + A   A +   W       R   +R I   + EK  H  +L +I+ GK   E + ++ +V    ++  G +  L+G       +P ER    +L    PLGVVG+I+ +N+P  +  W    AL  G   V K
Sbjct:   11 FIDGEWREPIKKNRIPVINPSTEEIIGDIPAATAEDVEVAVVAARRAFRRNNWSATSGAHRATYLRAIAAKITEKKDHFVKLETIDSGKPFDEAVLDIDDVASCFEYFAGQAEALDGKQKAPVTLPMERFKSHVLR--QPLGVVGLISPWNYPLLMATWKIAPALAAGCTAVLK 182          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ASTD1_SHEDO (N-succinylglutamate 5-semialdehyde dehydrogenase 1 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=astD1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 54/216 (25.00%), Postives = 93/216 (43.06%), Query Frame = 1
Query:   55 LSPETPGCFVNGKWKA-HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            L+P T   F+ G+W A  GP+ SS+NPAN + I   + A     +  + +   A   W  +   +R  +V    + L+E      R +++E GK L E   EV  +      ++  + +  G+V  +  P         P GVV V   +NFP  +   +   AL+ GN V++K             +L  +++++  LP  +     G    G+A
Sbjct:    7 LTPLTQTQFIAGQWLAGKGPSFSSVNPANGEVIWQGLGADAGQVDAAITSARAAFYTWSAMSLTERLVIVEAFAEQLKEHAELFARTIALETGKALWESRTEVGAMTGKIAISIKANAERTGTV-ENPMPGAKAFIRHKPHGVVAVFGPYNFPGHLPNGHIVPALIAGNTVLFK----PSELTPKVAELTMQLWQQAGLPNGVLNLLQGEIATGKA 217          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ALDH6_YEAST (Magnesium-activated aldehyde dehydrogenase, cytosolic OS=Saccharomyces cerevisiae GN=ALD6 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 51/179 (28.49%), Postives = 83/179 (46.37%), Query Frame = 1
Query:   52 GLSPETP-GCFVNGKW-KAH-GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEA--SKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            GL+ E P G F+N K+ KA  G T    +P+    +  V  A+ ED E  ++    A     W      +RG ++ ++ D L  ++  +  + +++ GK L    G+V   I+    A   + ++NG  I +    +M   T  P+GV G I  +NFP  +L W    AL  GN  + K
Sbjct:   19 GLTYEQPTGLFINNKFMKAQDGKTYPVEDPSTENTVCEVSSATTEDVEYAIECADRAFHDTEWATQDPRERGRLLSKLADELESQIDLVSSIEALDNGKTLALARGDVTIAINCLRDAAAYADKVNGRTI-NTGDGYMNFTTLEPIGVCGQIIPWNFPIMMLAWKIAPALAMGNVCILK 196          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ALDA_STAAR (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MRSA252) GN=aldA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 51/216 (23.61%), Postives = 92/216 (42.59%), Query Frame = 1
Query:   64 ETPGCFVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            E  G F+NG++   +   T+   NPA  + ++ +  A  +D +  +K   EA + W      +R +++R IGD L  +   +  + ++  GK + E    ++        +   +     G+V   ++   M +    P+GVVG + A+NFP  +  W    A+  GN +V +             K+  EV     LP  +     G G+E G A
Sbjct:   11 ENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDT-MSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-----LPNGVVNILTGKGSESGNA 220          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 50/174 (28.74%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   79 FVNGKWKAHGPTVSS-----INPANNQKIATVVEASLEDYEEGMKACSEASKI---WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEG-IGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+N +W     +VSS     +NPA  + I  V E    D ++ +KA  +A +I   W  + A +RG ++ ++ D +      L  + S+  GK+     + +V+  I    +  G + +++G  IPS+  N        P+GV G I  +N P  +  W    AL CGN VV K
Sbjct:   24 FINNEWH---DSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDG-NIFTYTRREPIGVCGQIIPWNGPLIIFTWKLGPALSCGNTVVVK 193          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_BACHK (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=rocA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 52/195 (26.67%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  115 VSSINPANNQK-IATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            + S+NPAN ++ +  V +AS E  E+ M+   E  + W +     R +++ +    +R + H    +L  E GK   E   +  E ID  ++      +L   +    RP      ++ PLGV  +I+ +NFP A++      ALV GN V+ K                 EV E   LP  +     G G+E+G
Sbjct:   52 IVSVNPANKEELVGRVSKASRELAEKAMQVADETFQTWRKSKPEMRADILFRAAAIVRRRKHEFSAILVKEAGKPWNEADADTAEAIDFMEYYGRQMLKLKDGIPVESRPIEYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLK----PASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVG 242          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_BACCZ (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=rocA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 52/195 (26.67%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  115 VSSINPANNQK-IATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            + S+NPAN ++ +  V +AS E  E+ M+   E  + W +     R +++ +    +R + H    +L  E GK   E   +  E ID  ++      +L   +    RP      ++ PLGV  +I+ +NFP A++      ALV GN V+ K                 EV E   LP  +     G G+E+G
Sbjct:   52 IVSVNPANKEELVGRVSKASRELAEKAMQVADETFQTWRKSKPEMRADILFRAAAIVRRRKHEFSAILVKEAGKPWNEADADTAEAIDFMEYYGRQMLKLKDGIPVESRPIEYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLK----PASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVG 242          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_BACCR (1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rocA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 52/195 (26.67%), Postives = 85/195 (43.59%), Query Frame = 1
Query:  115 VSSINPANNQK-IATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            + S+NPAN ++ +  V +AS E  E+ M+   E  + W +     R +++ +    +R + H    +L  E GK   E   +  E ID  ++      +L   +    RP      ++ PLGV  +I+ +NFP A++      ALV GN V+ K                 EV E   LP  +     G G+E+G
Sbjct:   52 IVSVNPANKEELVGRVSKASRELAEKAMQVADETFQTWRKSKPEMRADILFRAAAIVRRRKHEFSAILVKEAGKPWNEADADTAEAIDFMEYYGRQMLKLKDGIPVESRPIEYNRFSYIPLGVGVIISPWNFPFAIMAGMTTAALVSGNTVLLK----PASTTPVVAAKFMEVLEEAGLPAGVVNFVPGNGSEVG 242          
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
ROCA_STAES1.808e-1125.451-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAEQ1.808e-1125.451-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
BADH_SPIOL1.808e-1127.59Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
ASTD1_SHEDO1.808e-1125.00N-succinylglutamate 5-semialdehyde dehydrogenase 1... [more]
ALDH6_YEAST1.808e-1128.49Magnesium-activated aldehyde dehydrogenase, cytoso... [more]
ALDA_STAAR1.808e-1123.61Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
AL1A7_MOUSE1.808e-1128.74Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
ROCA_BACHK2.361e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACCZ2.361e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]
ROCA_BACCR2.361e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
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