FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAAR (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAAN (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=rocA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAAM (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rocA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAAE (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Newman) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAAC (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAAB (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAA9 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAA8 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAA3 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
[Close]
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAA2 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1 
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
ROCA_STAAR6.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAN6.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAM6.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAE6.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAC6.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAAB6.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA96.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA86.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA36.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA26.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
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