FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAA1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/165 (26.67%), Postives = 75/165 (45.45%), Query Frame = 1
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA +EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAANEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: GAPN_MAIZE (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Zea mays GN=GPN1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 46/174 (26.44%), Postives = 75/174 (43.10%), Query Frame = 1
Query:   79 FVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFA-------VGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            + +G+W+  A G +V+ +NP   +    V   + E+  + M A   A K W   P  KR +V+ +    L+E    +   L  E+ K   + + EV    D+  +        +G  + +     P    N   L +  PLGVV  I  FN+P  + G     AL+ GN +V K
Sbjct:   21 YADGEWRTSASGKSVAIVNPTTRKTQYRVQACTQEEVNKAMDAAKVAQKAWARTPLWKRADVLHKAAAILKEHKAPIAECLVKEIAKPAKDAVSEVVRSGDLVSYTAEEGVRILGEGKLVVSDSFPGNERNKYCLSSKIPLGVVLAIPPFNYPANLAGSKIGPALIAGNALVLK 194          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: FTHFD_MOUSE (10-formyltetrahydrofolate dehydrogenase OS=Mus musculus GN=Aldh1l1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 47/173 (27.17%), Postives = 84/173 (48.55%), Query Frame = 1
Query:   79 FVNGKW-KAHGP-TVSSINPANNQKIATVVEASLEDYEEGMKACSEASK--IWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIP--SERPN-HMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F+ G++  A G  T S+INP +   I  V  A + D ++ + A  EA +  +W ++ A  RG ++ ++ D + +    L  + +++ G +    +   V   I    +  G   ++ G+ IP    RPN ++ L    P+GV G++  +N+P  +L W     L  GN VV K
Sbjct:  425 FIGGEFVDAEGAKTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIK 597          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_RHILW (Betaine aldehyde dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 55/209 (26.32%), Postives = 93/209 (44.50%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGI-GEVQEVIDMCDFAVGLSRQ-LNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            F++G++     G  + S+ PA  + IA +  A+    E+ + A   A   W  +    RG ++++  D +RE+   L  L +++ GK + E I  +     D  +F  G++   LNGS IP  +          PLGV   I A+N+P  +  W A  AL+ GN +V+K               ++E+     LP  +F    G  + G
Sbjct:   10 FIDGEYVEDTDGTVIESLYPATGEVIARLHAATPAIVEKAIAAARRAQPEWAAMSPMARGRILKRAADIMRERNRALSELETLDTGKPIQETIVADPTSGADAFEFFGGVAPAGLNGSHIPLGQDFAYTKRV--PLGVCVGIGAWNYPQQIACWKAAPALISGNAMVFKPSENTPLGALK----IAEILHEAGLPKGLFNVIQGDRDTG 212          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 47/177 (26.55%), Postives = 78/177 (44.07%), Query Frame = 1
Query:   79 FVNGKWKA--HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKI-----WMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGS-----VIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            F++G+W+       +  INP+N + I  +   S ED E  + A   A K      W       R   +R I   + E+  H  +L +I+ GK   E + ++ +V    ++  G +  ++        +P ER    +L    P+GVVG+IT +N+P  +  W    AL  G   V K
Sbjct:   11 FIDGEWREPIKKNRIPIINPSNEEIIGDIPAGSSEDIEVAVAAARRALKRNKGREWAATSGAHRARYLRAIAAKVTERKDHFVKLETIDSGKPFDEAVLDIDDVATCFEYFAGQAEAMDAKQKAPVTLPMERFKSHVLR--QPIGVVGLITPWNYPLLMATWKIAPALAAGCTAVLK 185          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ASTD_SERP5 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Serratia proteamaculans (strain 568) GN=astD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 55/211 (26.07%), Postives = 87/211 (41.23%), Query Frame = 1
Query:   70 PGCFVNGKWK-AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQA 699
            P  F+NG W+   G   S  +P +NQ +     A   D     +A   A   W   P  +R ++V++    L E   HL   +S E  K   E + EVQ +I     ++  + Q+   V  +   +   +    P GV+ V   +NFP  +   +   AL+ GN VV+K             KL    +++  LP  +     GG E G+A
Sbjct:    4 PALFINGAWQQGRGAEFSKTDPVDNQPLWQANAADGSDVAAACEAARAAFPAWARTPFEQREQLVKRFAALLEEHKSHLAATISRETSKPRWETLTEVQAMIGKVAISL-QAYQVRTGVSQTAMADGASVLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPQTAEETLKL----WQQAGLPDGVINMVQGGRETGEA 209          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ALDH_CLAHE (Aldehyde dehydrogenase OS=Cladosporium herbarum GN=CLAH10 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 45/177 (25.42%), Postives = 82/177 (46.33%), Query Frame = 1
Query:   52 GLSPETPGCFVNGKWKA--HGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASK-IWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            G   +  G F+N ++     G T   INP++   I  V EA+ +D +  + A  +A +  W +     RG+++  + +   + +  L  + S++ GK +    G++   +    +  G + ++ G VI +  P+        P+GV G I  +NFP  +  W    A+ CGN VV K
Sbjct:   12 GKYEQPTGLFINNEFVKGQEGKTFDVINPSDESVITQVHEATEKDVDIAVAAARKAFEGSWRQETPENRGKLLNNLANLFEKNIDLLAAVESLDNGKAISMAKGDISMCVGCLRYYGGWADKITGKVIDTT-PDTFNYVKKEPIGVCGQIIPWNFPLLMWAWKIGPAIACGNTVVLK 187          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ALDA_STAAS (Putative aldehyde dehydrogenase aldA OS=Staphylococcus aureus (strain MSSA476) GN=aldA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 50/216 (23.15%), Postives = 92/216 (42.59%), Query Frame = 1
Query:   64 ETPGCFVNGKWK--AHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            E  G F+NG++   +   T+   NPA  + ++ +  A  +D +  +K   +A + W      +R +++R IGD L  +   +  + ++  GK + E    ++        +   +     G+V   ++   M +    P+GVVG + A+NFP  +  W    A+  GN +V +             K+  EV     LP  +     G G+E G A
Sbjct:   11 ENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQDAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDT-MSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEV-----LPKGVVNILTGKGSESGNA 220          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: ROCA_STAAW (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=rocA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 44/165 (26.67%), Postives = 74/165 (44.85%), Query Frame = 1
Query:   82 VNGKWKAHGPTVSSINPAN-NQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            +NG+       + SINPA+ +Q IA   +A+ +D E+  KA  EA K W    A  R E++ ++   +R +   +  ++  E GK   E +G+  E ID  ++       L       +R        +  +G    I  +NFP A++       +V GN V+ K
Sbjct:   41 INGEKIFKDDKIKSINPADTSQVIANASKATKQDVEDAFKAADEAYKSWKTWSANDRAELMLRVSAIIRRRKAEIAAIMVYEAGKPWDEAVGDAAEGIDFIEYYARSMMDLAQGKPVLDREGEHNKYFYKSIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLK 205          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: GABD_BACSU (Succinate-semialdehyde dehydrogenase [NADP+] OS=Bacillus subtilis GN=gabD PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 39/143 (27.27%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  127 NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCG 555
            NPA  ++I T+ + S  + EE ++   +A K W +  A +R  ++++  + + E    L  L++ E GK   E +GEV       ++    ++++ G  +P+      ++ T  P+G V  IT +NFP A++   A  AL  G
Sbjct:    9 NPATGEEIKTIPQQSATEVEEAIERSHQAFKTWSKTSANERTSLLKKWYELIVEHKEELADLITKENGKPYQEAVGEVLYGAGYIEWFAEEAKRVYGRTVPAPTTGKRIVVTRQPVGPVAAITPWNFPNAMITRKAAPALAAG 151          
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
ROCA_STAA16.869e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
GAPN_MAIZE6.869e-1126.44NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
FTHFD_MOUSE6.869e-1127.1710-formyltetrahydrofolate dehydrogenase OS=Mus mus... [more]
BETB_RHILW6.869e-1126.32Betaine aldehyde dehydrogenase OS=Rhizobium legumi... [more]
BADH_BETVU6.869e-1126.55Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
ASTD_SERP56.869e-1126.07N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ALDH_CLAHE6.869e-1125.42Aldehyde dehydrogenase OS=Cladosporium herbarum GN... [more]
ALDA_STAAS6.869e-1123.15Putative aldehyde dehydrogenase aldA OS=Staphyloco... [more]
ROCA_STAAW8.972e-1126.671-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
GABD_BACSU8.972e-1127.27Succinate-semialdehyde dehydrogenase [NADP+] OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
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