FC931724

Overview
NameFC931724
Unique NameFC931724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14856 contig Ccv1_Contig14856:144..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_PSEU2 (Betaine aldehyde dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=betB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 55/196 (28.06%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  112 TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            T  +INPAN + +A +  A  +D E  + A  +  KIW  + A +R  ++R+  D LRE+   L  L +++ GK + E    ++    D+ ++  GL   + G  IP  R +  +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    +P  +F    G G E+G
Sbjct:   23 TFDAINPANGEVLAQIQRAGKDDVERAVVAAEKGQKIWAAMTAVERSRILRRAVDILRERNDELAALETLDTGKAISETRYVDIVTGADVLEYYAGLVPAIEGEQIPL-RDSSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLK----LAEIYTEAGVPNGVFNVLTGSGREVG 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 58/209 (27.75%), Postives = 99/209 (47.37%), Query Frame = 1
Query:   79 FVNGKWKAHGP--TVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIG 693
            +++G +   G   T  +INPAN + +A V  A+ ED E  + +  +  KIW  + A +R  ++R+  D LRE+   L  L +++ GK   E    ++    D+ ++  GL   + G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    +P  +F    G G E+G
Sbjct:   10 YIDGAYSDAGSDATFEAINPANGEVLAHVQRATKEDVERAVVSAEKGQKIWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKAFSETKYVDIVTGADVLEYYAGLVPAIEGEQIPL-RDTSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTTLK----LAEIYTEAGVPNGVFNVLTGSGREVG 213          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_MARMS (Betaine aldehyde dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=betB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 55/209 (26.32%), Postives = 98/209 (46.89%), Query Frame = 1
Query:   79 FVNGKWKAH--GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGI-GEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIGQ 696
            +++G++ A   G    +INPA  + IATV  A   + +  +++  +  K+W  +   +RG ++++  + LRE    L RL  ++ GK L E I  ++Q   D+ ++  GL+ ++ G        N        PLG+   I A+N+P  +  W +  AL  GN +++K               ++E+F    LP  +F    G A  GQ
Sbjct:    7 YIHGRYHASTSGEHFETINPATGEVIATVEHAGQAELDAAVESAKQGQKVWSAMSPVERGRILKKAAELLRENNEELARLEVLDTGKPLQEAIVVDIQTGADVIEYYAGLTDKIQGDYQDLGNGNFFYTRR-EPLGICAGIGAWNYPIQIAMWKSGPALAAGNAMIFKPSEETPLTALK----LAEIFTEAGLPDGVFNVIQGDARTGQ 210          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_ERWCT (Betaine aldehyde dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=betB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 59/211 (27.96%), Postives = 97/211 (45.97%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            ++NG +       T  ++NPAN   IA +  A+  D +  + A +   K+W  + A +R  ++R+  D LRE+   L  L + + GK L E    ++    D+ ++  GL   L G  IP  R    +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    LP  +F    G G  +GQA
Sbjct:   10 YINGAYVDSTGNDTFDAVNPANGDIIACIQSATAADVDRAVSAATAGQKVWAAMTAMERSRILRRAVDILRERNDELALLETHDTGKPLSETRTVDIVTGADVLEYYAGLIPMLEGQQIPL-RDTSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALK----LAEIYTEAGLPAGVFNVLTGTGKSVGQA 215          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA2_BACHK (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus thuringiensis subsp. konkukian GN=iolA2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   79 FVNGKWKAHGPTVSSI--NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            ++ G+W     T      NPA  + IA V  ++  D E+ + A +EA K W +   PKR  ++ +    L +    L +L++IE GK   E  GEV   I+  +FA G    + G  +P             P+GV+G IT FNFP  V  W   +A+ CGN  V K
Sbjct:   12 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVLAANEAFKSWSKTAVPKRARILFKYQQLLVDNWEELAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIESGMYRYPIGVIGGITPFNFPMMVPCWMFPLAIACGNTFVLK 178          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA2_BACAH (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus thuringiensis (strain Al Hakam) GN=iolA2 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   79 FVNGKWKAHGPTVSSI--NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            ++ G+W     T      NPA  + IA V  ++  D E+ + A +EA K W +   PKR  ++ +    L +    L +L++IE GK   E  GEV   I+  +FA G    + G  +P             P+GV+G IT FNFP  V  W   +A+ CGN  V K
Sbjct:   12 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKGDVEQAVLAANEAFKSWSKTAVPKRARILFKYQQLLVDNWEELAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIESGMYRYPIGVIGGITPFNFPMMVPCWMFPLAIACGNTFVLK 178          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_YERPY (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=betB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 56/210 (26.67%), Postives = 101/210 (48.10%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQ 696
            ++NG +     G T  ++NPAN + IA +  A+ +D ++ + A  +   +W  + A +R  ++R+  D LR++   L  + + + GK L E    ++    D+ ++  GL   L G  IP  R +  +     PLGVV  I A+N+P  +  W +  AL  GN +++K               ++E++    LP  +F    G G ++GQ
Sbjct:   10 YINGAYTDSTSGDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQGQPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPL-RGSAFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALK----LAEIYTEAGLPAGVFNVLTGSGDQVGQ 214          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: IOLA3_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 3 OS=Bacillus cereus (strain ZK / E33L) GN=iolA3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 54/167 (32.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   79 FVNGKWKAHGPTVSSI--NPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWK 573
            ++ G+W     T      NPA  + IA V  ++  D E+ + A +EA K W +   PKR  ++ +    L +    L +L++IE GK   E  GEV   I+  +FA G    + G  +P             P+GV+G IT FNFP  V  W   +A+ CGN  V K
Sbjct:   12 YIGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVLAANEAFKSWSKTAVPKRARILFKYQQLLVDNWEDLAKLITIENGKSYNEAYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIESGMYRYPIGVIGGITPFNFPMMVPCWMFPLAIACGNTFVLK 178          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_PECCP (Betaine aldehyde dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=betB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 61/211 (28.91%), Postives = 98/211 (46.45%), Query Frame = 1
Query:   79 FVNGKW--KAHGPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPE-GIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCG-GAEIGQA 699
            ++NG +       T  ++NPAN + IA +  A++ D +  + A +   KIW  + A +R  ++R+  D LRE+   L  L + + GK L E    ++    D+ ++  GL   L G  IP  R          PLGVV  I A+N+P  +  W +  AL  GN +++K               ++EV+    LP  +F    G G  +GQA
Sbjct:   10 YINGAYVDSTGDDTFDAVNPANGEIIAQLQSATVADVDRAVIAAAAGQKIWAAMTAMERSRILRRAVDILRERNDELALLETHDTGKPLSETRTVDIVTGADVLEYYAGLIPMLEGQQIPL-RDTSFAYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTSLTALK----LAEVYTEAGLPAGVFNVLTGTGQSVGQA 215          
BLAST of FC931724 vs. ExPASy Swiss-Prot
Match: BETB_BURPP (Betaine aldehyde dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 51/197 (25.89%), Postives = 94/197 (47.72%), Query Frame = 1
Query:  106 GPTVSSINPANNQKIATVVEASLEDYEEGMKACSEASKIWMELPAPKRGEVVRQIGDALREKLHHLGRLLSIEMGKILPEGIG-EVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLETWNPLGVVGVITAFNFPCAVLGWNACIALVCGNCVVWKGXXXXXXXXXXXXKLVSEVFERNKLPGAIFTSFCGGAEIG 693
            G T  +++PA  + +A+V +AS  D +  +++  +  + W  L A +R  ++R+  D LRE+   L  L + + GK + E +  ++    D+ ++  GL+  + G  IP  RP   +     PLGV   I A+N+P  +  W +  AL  GN +++K               ++E+F    +P  +F    G   +G
Sbjct:   21 GETFDTLDPATGETLASVQQASAADVDRAVRSAKQGQREWAALTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGQQIPL-RPTSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEITPLSALK----LAEIFTEAGVPAGVFNVVQGDGRVG 212          
The following BLAST results are available for this feature:
BLAST of FC931724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 332
Match NameE-valueIdentityDescription
BETB_PSEU21.094e-1628.06Betaine aldehyde dehydrogenase OS=Pseudomonas syri... [more]
BETB_PSEPF1.094e-1627.75Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_MARMS1.094e-1626.32Betaine aldehyde dehydrogenase OS=Marinomonas sp. ... [more]
BETB_ERWCT1.094e-1627.96Betaine aldehyde dehydrogenase OS=Erwinia carotovo... [more]
IOLA2_BACHK1.429e-1632.34Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_BACAH1.429e-1632.34Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_YERPY1.429e-1626.67Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
IOLA3_BACCZ1.866e-1632.34Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_PECCP1.866e-1628.91Betaine aldehyde dehydrogenase OS=Pectobacterium c... [more]
BETB_BURPP1.866e-1625.89Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108C07EF PostHarvP1 Citrus clementina cDNA clone C34108C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931724 ID=FC931724; Name=FC931724; organism=Citrus clementina; type=EST; length=726bp
GTTGCAGAGATGGAATTTGCAAAGCAAGAGTACGAGTTTCTGAGTGAGAT
CGGCTTAAGTCCAGAAACTCCTGGATGTTTTGTGAATGGCAAGTGGAAGG
CACATGGTCCTACTGTCTCCTCTATCAATCCTGCTAACAATCAGAAAATT
GCTACTGTTGTGGAGGCTTCACTTGAGGATTATGAGGAAGGCATGAAAGC
TTGCAGCGAAGCATCTAAGATATGGATGGAACTTCCAGCTCCTAAGAGAG
GGGAGGTTGTTAGACAAATAGGTGATGCATTGAGAGAAAAACTGCATCAT
CTCGGCCGTCTTCTTTCAATTGAGATGGGAAAAATTCTTCCAGAAGGAAT
TGGGGAAGTCCAAGAAGTTATTGACATGTGTGATTTTGCTGTGGGTTTAA
GCCGGCAACTTAATGGATCAGTAATACCTTCAGAACGTCCCAATCATATG
ATGTTAGAGACATGGAATCCTCTTGGGGTAGTTGGTGTCATTACAGCATT
TAACTTCCCGTGTGCTGTTCTTGGATGGAATGCATGCATTGCACTAGTCT
GCGGCAACTGTGTTGTTTGGAAAGGTGCTCCAACAACTCCTTTGATCACC
ATAGCAATAACAAAGCTGGTGTCTGAGGTTTTCGAGAGGAACAAGTTACC
TGGTGCAATTTTTACCTCTTTTTGTGGTGGGGCTGAGATAGGTCAAGCAT
AGCGAAAGATCACGTATTCTCTGGTT
back to top