FC931728

Overview
NameFC931728
Unique NameFC931728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS2_LISIN (Ribose-phosphate pyrophosphokinase 2 OS=Listeria innocua GN=prs2 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 7.105e-12
Identity = 21/55 (38.18%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  461 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQ 625
            ++KLFS T+   L+ +IA Y+ + L ++ +++F+DGE+ + ++ES+RG + Y+VQ
Sbjct:    4 KMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQ 58          

HSP 2 Score: 38.891 bits (89), Expect = 7.105e-12
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 3
Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            +E LMELLIM+DA +RAS  +I  ++P  GY
Sbjct:   65 NERLMELLIMVDALKRASVHSINIIMPYYGY 95          
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_BIFLO (Ribose-phosphate pyrophosphokinase OS=Bifidobacterium longum GN=prs PE=3 SV=2)

HSP 1 Score: 46.9802 bits (110), Expect = 9.197e-12
Identity = 22/61 (36.07%), Postives = 40/61 (65.57%), Query Frame = 2
Query:  470 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA*KS 652
            L +G  +P L++++A  +G+++ +     FA+GE+YV+  ESVRG DV+++Q    P  K+
Sbjct:   16 LVTGRIHPKLAEDVAEQLGIDVLETTAYDFANGEMYVRYTESVRGADVFVLQSHYKPINKA 76          

HSP 2 Score: 43.8986 bits (102), Expect = 9.197e-12
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 3
Query:  651 LMELLIMIDACRRASAKNITAVIPLLGY 734
            +ME LIMIDA +RASA++ITAV PLLGY
Sbjct:   77 IMEQLIMIDALKRASARSITAVCPLLGY 104          
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_CORGL (Ribose-phosphate pyrophosphokinase OS=Corynebacterium glutamicum GN=prs PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.617e-11
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  446 RTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +     + LFSG A+P L++ +A  + V +  +  + FA+GEIYV+ +ESVRG D +++Q    P
Sbjct:    6 KQNQKNLMLFSGRAHPELAEAVAKELDVNVTPMTARDFANGEIYVRFEESVRGSDCFVLQSHTQP 70          

HSP 2 Score: 37.3502 bits (85), Expect = 2.617e-11
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  651 LMELLIMIDACRRASAKNITAVIPLLGY 734
            LME L+MIDA +R SAK ITA++P   Y
Sbjct:   75 LMEQLLMIDALKRGSAKRITAILPFYPY 102          
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_NITEU (Ribose-phosphate pyrophosphokinase OS=Nitrosomonas europaea GN=prs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 27/59 (45.76%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            + +F+GTANP L+ ++  Y+ + LG+ N+ RF+DGE+ V++ E+VRG DV+++Q TC P
Sbjct:    6 LMVFTGTANPKLAHDVVKYLNINLGRANVGRFSDGEVMVEILENVRGNDVFVLQSTCTP 64          
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_LEPIN (Ribose-phosphate pyrophosphokinase OS=Leptospira interrogans GN=prs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 28/63 (44.44%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  455 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 643
            N  I +F+G +N  +++EI  ++G++ GKIN+K+F+DGEI V+++++VRG +V++VQ T  PA
Sbjct:    2 NGDIAVFAGNSNKQIAEEICTHLGIQSGKINLKKFSDGEISVKIEDNVRGKEVFIVQSTSAPA 64          
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_LEPIC (Ribose-phosphate pyrophosphokinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=prs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 28/63 (44.44%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  455 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 643
            N  I +F+G +N  +++EI  ++G++ GKIN+K+F+DGEI V+++++VRG +V++VQ T  PA
Sbjct:    2 NGDIAVFAGNSNKQIAEEICTHLGIQSGKINLKKFSDGEISVKIEDNVRGKEVFIVQSTSAPA 64          
The following BLAST results are available for this feature:
BLAST of FC931728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
KPRS2_LISIN7.105e-1238.18Ribose-phosphate pyrophosphokinase 2 OS=Listeria i... [more]
KPRS_BIFLO9.197e-1236.07Ribose-phosphate pyrophosphokinase OS=Bifidobacter... [more]
KPRS_CORGL2.617e-1136.92Ribose-phosphate pyrophosphokinase OS=Corynebacter... [more]
KPRS_NITEU3.156e-1145.76Ribose-phosphate pyrophosphokinase OS=Nitrosomonas... [more]
KPRS_LEPIN5.383e-1144.44Ribose-phosphate pyrophosphokinase OS=Leptospira i... [more]
KPRS_LEPIC5.383e-1144.44Ribose-phosphate pyrophosphokinase OS=Leptospira i... [more]

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Properties
Property NameValue
Genbank descriptionC34108C11EF PostHarvP1 Citrus clementina cDNA clone C34108C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931728 ID=FC931728; Name=FC931728; organism=Citrus clementina; type=EST; length=736bp
GGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGCAA
CCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAAGA
AAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCTGA
AACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTCAC
AATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTTTC
GGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCTCG
GGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGCAT
TGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGACG
CTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGAAC
TACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCTTT
CCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACATA
AAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTTAG
AGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCGGCATGAAAAT
CTCATGGAGCTTTTGATAATGATAGATGCGTGTCGGAGAGCGTCAGCCAA
GAATATCACAGCTGTGATTCCTTTACTTGGATATGC
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