FC931728

Overview
NameFC931728
Unique NameFC931728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931728_ssr95 microsatellite FC931728_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:11..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_PASMU (Ribose-phosphate pyrophosphokinase OS=Pasteurella multocida GN=prs PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.652e-18
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            IKLF+G A P L++ I+  + + LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P
Sbjct:    4 IKLFTGNATPELAKRISERLYLSLGDATVGRFSDGEIQVQINENVRGSDVFIIQSTCAP 62

HSP 2 Score: 47.3654 bits (111), Expect = 6.652e-18
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELIVMVDALRRASAGRITAVIPYFGY 94
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_CAMJE (Ribose-phosphate pyrophosphokinase OS=Campylobacter jejuni GN=prs PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.655e-18
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:  467 KLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            K+FSG+AN   +++++ Y+ + L    +KRF+DGEI VQ+ ESVRG DV+++Q TC P
Sbjct:    5 KIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQIDESVRGKDVFIIQSTCAP 62

HSP 2 Score: 45.4394 bits (106), Expect = 6.655e-18
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMELLI+ DA RR+SA +ITA+IP  GY
Sbjct:   60 CAPT---NDNLMELLILTDALRRSSANSITAIIPYFGY 94
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_BLOFL (Ribose-phosphate pyrophosphokinase OS=Blochmannia floridanus GN=prs PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.462e-17
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  + + LG  ++ RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    1 MKLFTGNAIPELAQRIADKLYITLGNASVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 59

HSP 2 Score: 46.2098 bits (108), Expect = 1.462e-17
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NL+EL++M+DA RRASA  ITAVIP  GY
Sbjct:   57 CAPT---NDNLIELIVMVDALRRASAARITAVIPYFGY 91
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_BORPA (Ribose-phosphate pyrophosphokinase OS=Bordetella parapertussis GN=prs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.463e-17
Identity = 26/57 (45.61%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  470 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +F+GTAN  L+ ++  ++ + LGK+ + RF+DGE+ V++ E+VRG DV+++QPTC P
Sbjct:    2 IFTGTANTRLAVDVVNHLDMSLGKMTVGRFSDGEVMVEINENVRGKDVFVLQPTCAP 58

HSP 2 Score: 45.0542 bits (105), Expect = 1.463e-17
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLME+++M+DA RRASA  ITA IP  GY
Sbjct:   56 CAPT---NDNLMEIMVMVDALRRASAGRITAAIPYFGY 90
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_BORBR (Ribose-phosphate pyrophosphokinase OS=Bordetella bronchiseptica GN=prs PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.463e-17
Identity = 26/57 (45.61%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  470 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +F+GTAN  L+ ++  ++ + LGK+ + RF+DGE+ V++ E+VRG DV+++QPTC P
Sbjct:    2 IFTGTANTRLAVDVVNHLDMSLGKMTVGRFSDGEVMVEINENVRGKDVFVLQPTCAP 58

HSP 2 Score: 45.0542 bits (105), Expect = 1.463e-17
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLME+++M+DA RRASA  ITA IP  GY
Sbjct:   56 CAPT---NDNLMEIMVMVDALRRASAGRITAAIPYFGY 90
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS2_STRMU (Ribose-phosphate pyrophosphokinase 2 OS=Streptococcus mutans GN=prs2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.899e-17
Identity = 30/66 (45.45%), Postives = 49/66 (74.24%), Query Frame = 2 
Query:  443 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N   +  +KLFS T+N A++++IA  +GV LGK++ ++F+DGEI + ++ESVRG D+Y++Q T  P
Sbjct:    3 NAYPDKHLKLFSLTSNTAIAEKIAKVVGVPLGKLSSRQFSDGEIMINIEESVRGNDIYVIQSTSYP 68

HSP 2 Score: 43.5134 bits (101), Expect = 1.899e-17
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 3 
Query:  624 SPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            S PV  H  L ELLIM+DAC+RASA ++  VIP  GY
Sbjct:   66 SYPVNNH--LWELLIMVDACKRASANSVNVVIPYFGY 100
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_YERPE (Ribose-phosphate pyrophosphokinase OS=Yersinia pestis GN=prs PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.901e-17
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 46.9802 bits (110), Expect = 1.901e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELVVMVDALRRASAGRITAVIPYFGY 94
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_SALTY (Ribose-phosphate pyrophosphokinase OS=Salmonella typhimurium GN=prs PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.901e-17
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 46.9802 bits (110), Expect = 1.901e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELVVMVDALRRASAGRITAVIPYFGY 94
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_SALTI (Ribose-phosphate pyrophosphokinase OS=Salmonella typhi GN=prs PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.901e-17
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 46.9802 bits (110), Expect = 1.901e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELVVMVDALRRASAGRITAVIPYFGY 94
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_ECOLI (Ribose-phosphate pyrophosphokinase OS=Escherichia coli (strain K12) GN=prs PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.901e-17
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 46.9802 bits (110), Expect = 1.901e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELVVMVDALRRASAGRITAVIPYFGY 94
The following BLAST results are available for this feature:
BLAST of FC931728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
KPRS_PASMU6.652e-1849.15Ribose-phosphate pyrophosphokinase OS=Pasteurella ... [more]
KPRS_CAMJE6.655e-1848.28Ribose-phosphate pyrophosphokinase OS=Campylobacte... [more]
KPRS_BLOFL1.462e-1747.46Ribose-phosphate pyrophosphokinase OS=Blochmannia ... [more]
KPRS_BORPA1.463e-1745.61Ribose-phosphate pyrophosphokinase OS=Bordetella p... [more]
KPRS_BORBR1.463e-1745.61Ribose-phosphate pyrophosphokinase OS=Bordetella b... [more]
KPRS2_STRMU1.899e-1745.45Ribose-phosphate pyrophosphokinase 2 OS=Streptococ... [more]
KPRS_YERPE1.901e-1747.46Ribose-phosphate pyrophosphokinase OS=Yersinia pes... [more]
KPRS_SALTY1.901e-1747.46Ribose-phosphate pyrophosphokinase OS=Salmonella t... [more]
KPRS_SALTI1.901e-1747.46Ribose-phosphate pyrophosphokinase OS=Salmonella t... [more]
KPRS_ECOLI1.901e-1747.46Ribose-phosphate pyrophosphokinase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC34108C11EF PostHarvP1 Citrus clementina cDNA clone C34108C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931728 ID=FC931728; Name=FC931728; organism=Citrus clementina; type=EST; length=736bp
GGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGCAA
CCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAAGA
AAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCTGA
AACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTCAC
AATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTTTC
GGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCTCG
GGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGCAT
TGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGACG
CTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGAAC
TACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCTTT
CCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACATA
AAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTTAG
AGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCGGCATGAAAAT
CTCATGGAGCTTTTGATAATGATAGATGCGTGTCGGAGAGCGTCAGCCAA
GAATATCACAGCTGTGATTCCTTTACTTGGATATGC
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