FC931728 | Citrus Genome Database

Overview


Name	FC931728
Unique Name	FC931728
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	736

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_ECOL6 (Ribose-phosphate pyrophosphokinase OS=Escherichia coli O6 GN=prs PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.901e-17
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2

Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 46.9802 bits (110), Expect = 1.901e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELVVMVDALRRASAGRITAVIPYFGY 94

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_ECO57 (Ribose-phosphate pyrophosphokinase OS=Escherichia coli O157:H7 GN=prs PE=3 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.901e-17
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2

Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAP 62

HSP 2 Score: 46.9802 bits (110), Expect = 1.901e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELVVMVDALRRASAGRITAVIPYFGY 94

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_PSEAE (Ribose-phosphate pyrophosphokinase OS=Pseudomonas aeruginosa GN=prs PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.901e-17
Identity = 26/61 (42.62%), Postives = 46/61 (75.41%), Query Frame = 2

Query:  458 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +++ +F+G ANP L++ +   + + LG +++ +F+DGEI V++ E+VRG DV+L+QPTC P
Sbjct:    2 SKMMVFTGNANPDLARRVVRQLHIPLGDVSVGKFSDGEISVEINENVRGKDVFLIQPTCAP 62

HSP 2 Score: 44.2838 bits (103), Expect = 1.901e-17
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M DA RR+SA  ITAVIP  GY
Sbjct:   60 CAPT---NDNLMELVVMADAFRRSSATRITAVIPYFGY 94

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: PRPSB_DICDI (Ribose-phosphate pyrophosphokinase B OS=Dictyostelium discoideum GN=prsB PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.209e-17
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 2

Query:  452 TNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 643
            +NNR+ +  G A+P LS+EIA  +  E+G   + +FA+ E  V + ESVR  D+Y+VQPTC P+
Sbjct:    2 SNNRLVILHGNAHPKLSKEIASCLNTEVGNALVSKFANSETQVIINESVRDVDLYIVQPTCNPS 65

HSP 2 Score: 45.0542 bits (105), Expect = 3.209e-17
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P V  ++ LMELL+M+D  +RASA  ITAV+P  GY
Sbjct:   62 CNPSV--NDYLMELLVMVDGAKRASAHRITAVVPFFGY 97

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS1_ENTFA (Ribose-phosphate pyrophosphokinase 1 OS=Enterococcus faecalis GN=prs1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.211e-17
Identity = 29/60 (48.33%), Postives = 45/60 (75.00%), Query Frame = 2

Query:  461 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            R+K+FS  +N  L+++IA  +GVELGK ++ +F+DGEI V ++ES+RG  VY++Q T  P
Sbjct:    9 RLKIFSLNSNRPLAEKIADAVGVELGKCSVTQFSDGEIQVNIEESIRGAHVYVIQSTSSP 68

HSP 2 Score: 45.0542 bits (105), Expect = 3.211e-17
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  624 SPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            S PV  ++NLMELLIMIDA +RASAK I  V+P  GY
Sbjct:   66 SSPV--NDNLMELLIMIDALKRASAKTINVVMPYYGY 100

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_XYLFT (Ribose-phosphate pyrophosphokinase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=prs PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.211e-17
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 2

Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 643
            + +FSG AN  L+Q I   +GV +GK  + RF+DGE  V+++ESVR  +V++VQPTC P+
Sbjct:   10 LMVFSGNANKPLTQSICKELGVRMGKSLVSRFSDGEEQVEIEESVRRQEVFVVQPTCAPS 69

HSP 2 Score: 45.8246 bits (107), Expect = 3.211e-17
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P     ENLMELL++IDA +RAS  ++TAVIP  GY
Sbjct:   66 CAPSA---ENLMELLVIIDALKRASVSSVTAVIPYFGY 100

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_XYLFA (Ribose-phosphate pyrophosphokinase OS=Xylella fastidiosa GN=prs PE=3 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 3.211e-17
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 2

Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPA 643
            + +FSG AN  L+Q I   +GV +GK  + RF+DGE  V+++ESVR  +V++VQPTC P+
Sbjct:   10 LMVFSGNANKPLTQSICKELGVRMGKSLVSRFSDGEEQVEIEESVRRQEVFVVQPTCAPS 69

HSP 2 Score: 45.8246 bits (107), Expect = 3.211e-17
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P     ENLMELL++IDA +RAS  ++TAVIP  GY
Sbjct:   66 CAPSA---ENLMELLVIIDALKRASVSSVTAVIPYFGY 100

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_THETN (Ribose-phosphate pyrophosphokinase OS=Thermoanaerobacter tengcongensis GN=prs PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.213e-17
Identity = 28/61 (45.90%), Postives = 44/61 (72.13%), Query Frame = 2

Query:  458 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N +K+F+G +NP L+ EIA ++G++L    +  F+DGEI V++ ESVRG  V+++Q TC P
Sbjct:    6 NSLKIFTGNSNPKLASEIAEHLGLKLADSEVGTFSDGEISVRIGESVRGASVFVIQSTCAP 66

HSP 2 Score: 44.2838 bits (103), Expect = 3.213e-17
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    + NLMELLIMIDA +RASA  I AVIP  GY
Sbjct:   64 CAPV---NNNLMELLIMIDAFKRASAAEINAVIPYYGY 98

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_BUCBP (Ribose-phosphate pyrophosphokinase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=prs PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.213e-17
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 2

Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLFSG + P L++ IA  + V LG  ++ +F+DGEI VQ+ E+VRG DV+++Q TC P
Sbjct:    4 MKLFSGNSVPKLAESIANKLYVNLGNASVGKFSDGEINVQINENVRGSDVFIIQSTCFP 62

HSP 2 Score: 46.2098 bits (108), Expect = 3.213e-17
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3

Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            ++NLMEL++M+DA RRASA  ITAVIP  GY
Sbjct:   64 NDNLMELVVMVDALRRASAGRITAVIPYFGY 94

[Close]

BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: PRPSA_DICDI (Ribose-phosphate pyrophosphokinase A OS=Dictyostelium discoideum GN=prsA PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.213e-17
Identity = 26/61 (42.62%), Postives = 43/61 (70.49%), Query Frame = 2

Query:  458 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +RIK+ +G A+  L+ EI+  + + LGK ++ +F++GE  V + ES+R  DVY++QPTC P
Sbjct:    3 DRIKILTGNAHRELASEISDDLNLALGKAHVGKFSNGETSVMISESIRDMDVYIIQPTCNP 63

HSP 2 Score: 48.9062 bits (115), Expect = 3.213e-17
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 3

Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P V  ++NLMELLIM DA RRASA  ITAVIP  GY
Sbjct:   61 CNPNV--NDNLMELLIMADAIRRASAHRITAVIPCFGY 96

The following BLAST results are available for this feature:

BLAST of FC931728 vs. ExPASy Swiss-Prot

BLAST of FC931728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146


Match Name	E-value	Identity	Description
KPRS_ECOL6	1.901e-17	47.46	Ribose-phosphate pyrophosphokinase OS=Escherichia ...	[more]
KPRS_ECO57	1.901e-17	47.46	Ribose-phosphate pyrophosphokinase OS=Escherichia ...	[more]
KPRS_PSEAE	1.901e-17	42.62	Ribose-phosphate pyrophosphokinase OS=Pseudomonas ...	[more]
PRPSB_DICDI	3.209e-17	45.31	Ribose-phosphate pyrophosphokinase B OS=Dictyostel...	[more]
KPRS1_ENTFA	3.211e-17	48.33	Ribose-phosphate pyrophosphokinase 1 OS=Enterococc...	[more]
KPRS_XYLFT	3.211e-17	48.33	Ribose-phosphate pyrophosphokinase OS=Xylella fast...	[more]
KPRS_XYLFA	3.211e-17	48.33	Ribose-phosphate pyrophosphokinase OS=Xylella fast...	[more]
KPRS_THETN	3.213e-17	45.90	Ribose-phosphate pyrophosphokinase OS=Thermoanaero...	[more]
KPRS_BUCBP	3.213e-17	49.15	Ribose-phosphate pyrophosphokinase OS=Buchnera aph...	[more]
PRPSA_DICDI	3.213e-17	42.62	Ribose-phosphate pyrophosphokinase A OS=Dictyostel...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34108C11EF PostHarvP1 Citrus clementina cDNA clone C34108C11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931728 ID=FC931728; Name=FC931728; organism=Citrus clementina; type=EST; length=736bp
GGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGCAA
CCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAAGA
AAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCTGA
AACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTCAC
AATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTTTC
GGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCTCG
GGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGCAT
TGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGACG
CTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGAAC
TACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCTTT
CCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACATA
AAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTTAG
AGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCGGCATGAAAAT
CTCATGGAGCTTTTGATAATGATAGATGCGTGTCGGAGAGCGTCAGCCAA
GAATATCACAGCTGTGATTCCTTTACTTGGATATGC