FC931728

Overview
NameFC931728
Unique NameFC931728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931728_ssr95 microsatellite FC931728_ssr95:95..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:11..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_BORPE (Ribose-phosphate pyrophosphokinase OS=Bordetella pertussis GN=prs PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 3.214e-17
Identity = 25/57 (43.86%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:  470 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +F+GTAN  L+ ++  ++ + LGK+ + R++DGE+ V++ E+VRG DV+++QPTC P
Sbjct:    2 IFTGTANTRLAVDVVNHLDMSLGKMTVGRYSDGEVMVEINENVRGKDVFVLQPTCAP 58

HSP 2 Score: 45.0542 bits (105), Expect = 3.214e-17
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLME+++M+DA RRASA  ITA IP  GY
Sbjct:   56 CAPT---NDNLMEIMVMVDALRRASAGRITAAIPYFGY 90
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS2_LACLA (Ribose-phosphate pyrophosphokinase 2 OS=Lactococcus lactis subsp. lactis GN=prs2 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.427e-17
Identity = 28/63 (44.44%), Postives = 49/63 (77.78%), Query Frame = 2 
Query:  452 TNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPT-CP 637
            +++ +KLF+  +NP L+++I+ + GV LGK++ K+F+DGEI + ++ESVR  D+++VQ T CP
Sbjct:    4 SDSHLKLFALNSNPGLAEKISQFTGVPLGKLSSKQFSDGEIMINMEESVRSQDIFIVQSTSCP 66

HSP 2 Score: 44.669 bits (104), Expect = 5.427e-17
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 3 
Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            +++L ELLIMIDAC+RASA+ I  VIP  GY
Sbjct:   68 NDHLWELLIMIDACKRASARTINVVIPYFGY 98
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: PRPSC_DICDI (Ribose-phosphate pyrophosphokinase C OS=Dictyostelium discoideum GN=prsC PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.427e-17
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:  452 TNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            T   ++L SG+A+P  ++ ++  M +EL K   K F +GE  V L ESVR   VY++QPTC P
Sbjct:    3 TMESVRLISGSAHPQFAELLSKGMNIELSKCESKHFLNGETSVILGESVRSASVYIIQPTCSP 65

HSP 2 Score: 51.2174 bits (121), Expect = 5.427e-17
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            CSP V  ++N+MELL+++DA RRAS+K+ITAVIP  GY
Sbjct:   63 CSPNV--NDNIMELLVLVDAVRRASSKHITAVIPFFGY 98
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS1_LISWE (Ribose-phosphate pyrophosphokinase 1 OS=Listeria welshimeri GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.428e-17
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  443 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 41.9726 bits (97), Expect = 5.428e-17
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            ++NLMELLIMIDA +RASA  I  V+P  GY
Sbjct:   70 NQNLMELLIMIDALKRASAATINIVMPYYGY 100
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS1_LISMO (Ribose-phosphate pyrophosphokinase 1 OS=Listeria monocytogenes GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.428e-17
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  443 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 41.9726 bits (97), Expect = 5.428e-17
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            ++NLMELLIMIDA +RASA  I  V+P  GY
Sbjct:   70 NQNLMELLIMIDALKRASAATINIVMPYYGY 100
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS1_LISMF (Ribose-phosphate pyrophosphokinase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.428e-17
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  443 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 41.9726 bits (97), Expect = 5.428e-17
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            ++NLMELLIMIDA +RASA  I  V+P  GY
Sbjct:   70 NQNLMELLIMIDALKRASAATINIVMPYYGY 100
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS1_LISIV (Ribose-phosphate pyrophosphokinase 1 OS=Listeria ivanovii GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.428e-17
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  443 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 41.9726 bits (97), Expect = 5.428e-17
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            ++NLMELLIMIDA +RASA  I  V+P  GY
Sbjct:   70 NQNLMELLIMIDALKRASAATINIVMPYYGY 100
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS1_LISIN (Ribose-phosphate pyrophosphokinase 1 OS=Listeria innocua GN=prs1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.428e-17
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:  443 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNP 68

HSP 2 Score: 41.9726 bits (97), Expect = 5.428e-17
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  642 HENLMELLIMIDACRRASAKNITAVIPLLGY 734
            ++NLMELLIMIDA +RASA  I  V+P  GY
Sbjct:   70 NQNLMELLIMIDALKRASAATINIVMPYYGY 100
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_RALSO (Ribose-phosphate pyrophosphokinase OS=Ralstonia solanacearum GN=prs PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.430e-17
Identity = 25/59 (42.37%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            + +F+G ANP L++ +  ++ + LGK  + RF+DGE+ V++QE+VRG  V+++Q TC P
Sbjct:    6 LMVFTGNANPKLAEAVVKHLNIPLGKALVGRFSDGEVQVEIQENVRGKHVFILQSTCAP 64

HSP 2 Score: 46.2098 bits (108), Expect = 5.430e-17
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            C+P    ++NLMEL++M+DA +RASA+ ITA IP  GY
Sbjct:   62 CAPT---NDNLMELMVMVDALKRASARRITAAIPYFGY 96
[Close]
BLAST of FC931728 vs. ExPASy Swiss-Prot
Match: KPRS_BUCAP (Ribose-phosphate pyrophosphokinase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=prs PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.430e-17
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  464 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPP 640
            +KLF+G + P L++ IA  + + LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P
Sbjct:    4 MKLFAGNSIPKLAKFIAHRLYINLGNAAVGRFSDGEISVQINENVRGSDVFIIQSTCSP 62

HSP 2 Score: 47.3654 bits (111), Expect = 5.430e-17
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  621 CSPPVLRHENLMELLIMIDACRRASAKNITAVIPLLGY 734
            CSP    ++N+MEL++M+DA RRASA  ITAVIP  GY
Sbjct:   60 CSPT---NDNIMELVVMVDALRRASAGRITAVIPYFGY 94
The following BLAST results are available for this feature:
BLAST of FC931728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
KPRS_BORPE3.214e-1743.86Ribose-phosphate pyrophosphokinase OS=Bordetella p... [more]
KPRS2_LACLA5.427e-1744.44Ribose-phosphate pyrophosphokinase 2 OS=Lactococcu... [more]
PRPSC_DICDI5.427e-1742.86Ribose-phosphate pyrophosphokinase C OS=Dictyostel... [more]
KPRS1_LISWE5.428e-1743.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria w... [more]
KPRS1_LISMO5.428e-1743.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria m... [more]
KPRS1_LISMF5.428e-1743.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria m... [more]
KPRS1_LISIV5.428e-1743.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria i... [more]
KPRS1_LISIN5.428e-1743.94Ribose-phosphate pyrophosphokinase 1 OS=Listeria i... [more]
KPRS_RALSO5.430e-1742.37Ribose-phosphate pyrophosphokinase OS=Ralstonia so... [more]
KPRS_BUCAP5.430e-1747.46Ribose-phosphate pyrophosphokinase OS=Buchnera aph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108C11EF PostHarvP1 Citrus clementina cDNA clone C34108C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931728 ID=FC931728; Name=FC931728; organism=Citrus clementina; type=EST; length=736bp
GGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGCAA
CCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAAGA
AAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCTGA
AACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTCAC
AATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTTTC
GGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCTCG
GGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGCAT
TGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGACG
CTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGAAC
TACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCTTT
CCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACATA
AAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTTAG
AGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCGGCATGAAAAT
CTCATGGAGCTTTTGATAATGATAGATGCGTGTCGGAGAGCGTCAGCCAA
GAATATCACAGCTGTGATTCCTTTACTTGGATATGC
back to top