FC931729

Overview
NameFC931729
Unique NameFC931729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:13..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.710e-63
Identity = 101/177 (57.06%), Postives = 133/177 (75.14%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT  L +LL  DDKFGFI++DGNGTLFGTL GNT+EVLHKFSVDLP+
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGTLFGTLQGNTKEVLHKFSVDLPK 178          

HSP 2 Score: 54.6842 bits (130), Expect = 1.710e-63
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELA 753
            KKH RGGQSALRFARLRME R+NY+RK AE A
Sbjct:  178 KKHRRGGQSALRFARLRMESRNNYLRKVAEQA 209          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.096e-62
Identity = 101/177 (57.06%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT  L +LL  DDKFGFI++DGNG LFGTL GNTREVLHKFSVDLP+
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGALFGTLQGNTREVLHKFSVDLPK 178          

HSP 2 Score: 52.7582 bits (125), Expect = 1.096e-62
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAE 747
            KKH RGGQSALRF+RLRME R+NY+RK AE
Sbjct:  178 KKHRRGGQSALRFSRLRMESRNNYLRKVAE 207          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.557e-61
Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            RG+GTSM+SLI+PP+ Q++  TK++ DEF  A+NIK RVNRQSV  A+ SA QRLKLY + P NGL+LY G ++ ++GKE K+ IDFEP++PIN SLY CD+KFH D L  LLE+D  FGFIVMDG G L+  L GNT+ VL+KFSV+LP+
Sbjct:   27 RGSGTSMVSLIIPPKKQINDSTKLISDEFSKATNIKDRVNRQSVQDAMVSALQRLKLYQRTPNNGLILYCGKVLNEEGKEIKLLIDFEPYKPINTSLYFCDSKFHVDELGSLLETDPPFGFIVMDGQGALYANLQGNTKTVLNKFSVELPK 177          

HSP 2 Score: 59.3066 bits (142), Expect = 1.557e-61
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELA-HSFIS 768
            KKHGRGGQS++RFARLR+EKRHNY+RK  E+A  +FIS
Sbjct:  177 KKHGRGGQSSVRFARLRVEKRHNYLRKVCEVATQTFIS 214          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.009e-58
Identity = 91/150 (60.67%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            G+GTS+ISL++PP +Q+S VT ML +E+GTASNIKSRVN+ +VL AITSA  RLKLYN++PPNGL +Y G I  +DGK  KV ID+ P++PI+  +YLCD+KFHT+ L ELL +DD FGFI+MDG  TL  TLSG  R +L + +VDLP+
Sbjct:   35 GSGTSVISLLIPPGEQLSSVTGMLTNEYGTASNIKSRVNKNAVLSAITSAMSRLKLYNRLPPNGLAVYCGEI-EEDGKNTKVVIDYTPYKPISNFIYLCDSKFHTEHLRELLTNDDTFGFIIMDGKETLMATLSGTVRTILDRSTVDLPK 183          

HSP 2 Score: 58.9214 bits (141), Expect = 2.009e-58
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELAHS-FIS 768
            KKHGRGGQS++RFARLR E RHNYVRK AE A+S FIS
Sbjct:  183 KKHGRGGQSSVRFARLREEARHNYVRKVAERANSLFIS 220          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.453e-58
Identity = 87/151 (57.62%), Postives = 121/151 (80.13%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            RG GTS+IS+ M P++Q+S +   L +E+GTASNIKS  N+ SV  AIT++  RLK YN++PPNGL+LY GT++T + KEKK+T+D EPF+P++ SLYLCDNKFHT+ L+ +LESD+KFGFIV+DG+GT + TL G+ +E L  F+V+LP+
Sbjct:   29 RGMGTSVISIYMTPKEQISGMVTKLNNEYGTASNIKSHTNKLSVQSAITASLGRLKQYNRLPPNGLLLYCGTVLTAENKEKKLTLDIEPFKPVSRSLYLCDNKFHTEELHRMLESDEKFGFIVVDGSGTTYATLCGSVKEKLSSFTVELPK 179          

HSP 2 Score: 55.0694 bits (131), Expect = 4.453e-58
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAE 747
            KKHGRGGQS  RFAR+RME+RHNY+RK AE
Sbjct:  179 KKHGRGGQSKNRFARIRMERRHNYLRKVAE 208          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.571e-58
Identity = 90/151 (59.60%), Postives = 120/151 (79.47%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G+GTSMI+LI+  +DQ++   +ML +E G ASNIKSRV RQ+V  A+TS  ++LKLYNK PPNGLV++ G +  +DG EK + ID EPF+PIN +LY CD+ FHT+ + +LLE +DKFGFI+MDGNG+LFGTL G+TR VL KF+VDLP+
Sbjct:   30 KGSGTSMITLIINFKDQINIHARMLAEEVGKASNIKSRVTRQNVTDALTSTLEKLKLYNKTPPNGLVIFCGLVQQEDGGEKMIKIDLEPFKPINTTLYKCDSVFHTEEVRKLLEDNDKFGFIIMDGNGSLFGTLQGSTRTVLLKFNVDLPK 180          

HSP 2 Score: 53.5286 bits (127), Expect = 7.571e-58
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAE 747
            KKHGRGGQSA RFAR+R+EKR NY+RK AE
Sbjct:  180 KKHGRGGQSANRFARIRIEKRRNYLRKVAE 209          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.074e-56
Identity = 87/152 (57.24%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTSM+SLI+PP+D +++  K+L  E   A NIKSR+ +QSV+ AITS +++LKLY + P NGL LY G I  +DGK EKK+  DFEPFRPIN  LY C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LP+
Sbjct:   32 KGNGTSMVSLIIPPKDDINKYGKLLTGEMSAAQNIKSRITKQSVVTAITSTKEKLKLYKQTPTNGLCLYCGVIYMEDGKTEKKINFDFEPFRPINQFLYFCGGKFQTEPLLSLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPK 183          

HSP 2 Score: 55.8398 bits (133), Expect = 1.074e-56
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELAH 756
            KKH +GGQS++RFARLR EKRHNY+RK AELA+
Sbjct:  183 KKHRKGGQSSVRFARLREEKRHNYLRKVAELAN 215          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.400e-56
Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LP+
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPK 183          

HSP 2 Score: 56.225 bits (134), Expect = 1.400e-56
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELAHS 759
            KKH +GGQS++RFARLR EKRHNY+RK AELA S
Sbjct:  183 KKHRKGGQSSVRFARLREEKRHNYLRKVAELAGS 216          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.400e-56
Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF T+ L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LP+
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPK 183          

HSP 2 Score: 56.225 bits (134), Expect = 1.400e-56
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELAHS 759
            KKH +GGQS++RFARLR EKRHNY+RK AELA S
Sbjct:  183 KKHRKGGQSSVRFARLREEKRHNYLRKVAELAGS 216          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.736e-55
Identity = 87/151 (57.62%), Postives = 113/151 (74.83%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +G+GTSMISLI+  +DQ++   KML DE G ASNIKSRV RQ+V  A+TS  ++LKLYNK P NGL++Y G     D  EK   ID EPF+PIN SLY CD+ FHT+ + +LLE +D+FGF++MDGNG+LFG++ G TR V+ KF VDLP+
Sbjct:   30 KGSGTSMISLIINYKDQINPFMKMLVDEVGKASNIKSRVTRQNVTDALTSTMEKLKLYNKTPNNGLIIYCGLASEGDSGEKMFKIDMEPFKPINTSLYRCDSVFHTEEVKKLLEDNDRFGFLIMDGNGSLFGSVQGATRTVIQKFLVDLPK 180          

HSP 2 Score: 53.5286 bits (127), Expect = 5.736e-55
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAE 747
            KKHGRGGQS+ RFAR+R E+RHNY+RK AE
Sbjct:  180 KKHGRGGQSSNRFARIRTERRHNYLRKVAE 209          
The following BLAST results are available for this feature:
BLAST of FC931729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_BLEAM1.710e-6357.06Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU1.096e-6257.06Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH1.557e-6160.93Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA2.009e-5860.67Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB4.453e-5857.62Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA7.571e-5859.60Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR1.074e-5657.24Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT1.400e-5655.92Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE1.400e-5655.92Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA5.736e-5557.62Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34108C12EF PostHarvP1 Citrus clementina cDNA clone C34108C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931729 ID=FC931729; Name=FC931729; organism=Citrus clementina; type=EST; length=771bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTCAGTGTTG
ACCTTCCAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCGGTTTGCCC
GACTTCGAATGGAGAAGCGCCATAACTATGTGAGGAAAACAGCTGAACTT
GCACACAGTTTTATATCAATC
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